Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3419

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3417 and Rru_A3418 overlap by 4 nucleotidesRru_A3418 and Rru_A3419 are separated by 186 nucleotidesRru_A3419 and Rru_A3420 are separated by 94 nucleotides Rru_A3417: Rru_A3417 - Extracellular ligand-binding receptor (NCBI), at 3,932,976 to 3,934,205 _A3417 Rru_A3418: Rru_A3418 - Transcriptional Regulator, TetR family (NCBI), at 3,934,202 to 3,934,906 _A3418 Rru_A3419: Rru_A3419 - Phosphoenolpyruvate carboxykinase (GTP) (NCBI), at 3,935,093 to 3,936,955 _A3419 Rru_A3420: Rru_A3420 - Pyridoxamine 5'-phosphate oxidase-related, FMN-binding (NCBI), at 3,937,050 to 3,937,862 _A3420 Position (kb) 3935 3936 3937Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 3934.329 kb on + strand, within Rru_A3418at 3934.329 kb on + strand, within Rru_A3418at 3934.330 kb on - strand, within Rru_A3418at 3934.330 kb on - strand, within Rru_A3418at 3934.332 kb on + strand, within Rru_A3418at 3934.333 kb on - strand, within Rru_A3418at 3934.333 kb on - strand, within Rru_A3418at 3934.558 kb on - strand, within Rru_A3418at 3934.558 kb on - strand, within Rru_A3418at 3934.558 kb on - strand, within Rru_A3418at 3934.593 kb on + strand, within Rru_A3418at 3934.788 kb on + strand, within Rru_A3418at 3934.789 kb on - strand, within Rru_A3418at 3937.052 kb on - strandat 3937.463 kb on - strand, within Rru_A3420at 3937.463 kb on - strand, within Rru_A3420at 3937.463 kb on - strand, within Rru_A3420at 3937.463 kb on - strand, within Rru_A3420at 3937.490 kb on - strand, within Rru_A3420at 3937.490 kb on - strand, within Rru_A3420at 3937.745 kb on - strand, within Rru_A3420at 3937.745 kb on - strand, within Rru_A3420at 3937.745 kb on - strand, within Rru_A3420at 3937.862 kb on + strandat 3937.863 kb on - strandat 3937.875 kb on + strandat 3937.875 kb on + strandat 3937.875 kb on + strandat 3937.875 kb on + strandat 3937.876 kb on - strandat 3937.877 kb on + strandat 3937.877 kb on + strandat 3937.877 kb on + strandat 3937.877 kb on + strandat 3937.878 kb on - strandat 3937.878 kb on - strandat 3937.878 kb on - strandat 3937.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,934,329 + Rru_A3418 0.18 -3.3
3,934,329 + Rru_A3418 0.18 -3.2
3,934,330 - Rru_A3418 0.18 -0.1
3,934,330 - Rru_A3418 0.18 +1.2
3,934,332 + Rru_A3418 0.18 -1.9
3,934,333 - Rru_A3418 0.19 -1.1
3,934,333 - Rru_A3418 0.19 +0.2
3,934,558 - Rru_A3418 0.50 +1.0
3,934,558 - Rru_A3418 0.50 -1.5
3,934,558 - Rru_A3418 0.50 -5.0
3,934,593 + Rru_A3418 0.55 -0.9
3,934,788 + Rru_A3418 0.83 +0.1
3,934,789 - Rru_A3418 0.83 -2.0
3,937,052 - -1.8
3,937,463 - Rru_A3420 0.51 +6.0
3,937,463 - Rru_A3420 0.51 +0.1
3,937,463 - Rru_A3420 0.51 +2.1
3,937,463 - Rru_A3420 0.51 +5.8
3,937,490 - Rru_A3420 0.54 +2.1
3,937,490 - Rru_A3420 0.54 +9.2
3,937,745 - Rru_A3420 0.85 +7.9
3,937,745 - Rru_A3420 0.85 -0.8
3,937,745 - Rru_A3420 0.85 -0.0
3,937,862 + -2.2
3,937,863 - +0.1
3,937,875 + +0.2
3,937,875 + -1.6
3,937,875 + -0.3
3,937,875 + -1.1
3,937,876 - -0.3
3,937,877 + +1.1
3,937,877 + -1.4
3,937,877 + -3.1
3,937,877 + -3.7
3,937,878 - +6.8
3,937,878 - +7.3
3,937,878 - +0.4
3,937,878 - +6.8

Or see this region's nucleotide sequence