Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3417 and Rru_A3418 overlap by 4 nucleotides Rru_A3418 and Rru_A3419 are separated by 186 nucleotides Rru_A3419 and Rru_A3420 are separated by 94 nucleotides
Rru_A3417: Rru_A3417 - Extracellular ligand-binding receptor (NCBI), at 3,932,976 to 3,934,205
_A3417
Rru_A3418: Rru_A3418 - Transcriptional Regulator, TetR family (NCBI), at 3,934,202 to 3,934,906
_A3418
Rru_A3419: Rru_A3419 - Phosphoenolpyruvate carboxykinase (GTP) (NCBI), at 3,935,093 to 3,936,955
_A3419
Rru_A3420: Rru_A3420 - Pyridoxamine 5'-phosphate oxidase-related, FMN-binding (NCBI), at 3,937,050 to 3,937,862
_A3420
Position (kb)
3935
3936
3937 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 3934.329 kb on + strand, within Rru_A3418 at 3934.329 kb on + strand, within Rru_A3418 at 3934.330 kb on - strand, within Rru_A3418 at 3934.330 kb on - strand, within Rru_A3418 at 3934.332 kb on + strand, within Rru_A3418 at 3934.333 kb on - strand, within Rru_A3418 at 3934.333 kb on - strand, within Rru_A3418 at 3934.558 kb on - strand, within Rru_A3418 at 3934.558 kb on - strand, within Rru_A3418 at 3934.558 kb on - strand, within Rru_A3418 at 3934.593 kb on + strand, within Rru_A3418 at 3934.788 kb on + strand, within Rru_A3418 at 3934.789 kb on - strand, within Rru_A3418 at 3937.052 kb on - strand at 3937.463 kb on - strand, within Rru_A3420 at 3937.463 kb on - strand, within Rru_A3420 at 3937.463 kb on - strand, within Rru_A3420 at 3937.463 kb on - strand, within Rru_A3420 at 3937.490 kb on - strand, within Rru_A3420 at 3937.490 kb on - strand, within Rru_A3420 at 3937.745 kb on - strand, within Rru_A3420 at 3937.745 kb on - strand, within Rru_A3420 at 3937.745 kb on - strand, within Rru_A3420 at 3937.862 kb on + strand at 3937.863 kb on - strand at 3937.875 kb on + strand at 3937.875 kb on + strand at 3937.875 kb on + strand at 3937.875 kb on + strand at 3937.876 kb on - strand at 3937.877 kb on + strand at 3937.877 kb on + strand at 3937.877 kb on + strand at 3937.877 kb on + strand at 3937.878 kb on - strand at 3937.878 kb on - strand at 3937.878 kb on - strand at 3937.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,934,329 + Rru_A3418 0.18 -3.3 3,934,329 + Rru_A3418 0.18 -3.2 3,934,330 - Rru_A3418 0.18 -0.1 3,934,330 - Rru_A3418 0.18 +1.2 3,934,332 + Rru_A3418 0.18 -1.9 3,934,333 - Rru_A3418 0.19 -1.1 3,934,333 - Rru_A3418 0.19 +0.2 3,934,558 - Rru_A3418 0.50 +1.0 3,934,558 - Rru_A3418 0.50 -1.5 3,934,558 - Rru_A3418 0.50 -5.0 3,934,593 + Rru_A3418 0.55 -0.9 3,934,788 + Rru_A3418 0.83 +0.1 3,934,789 - Rru_A3418 0.83 -2.0 3,937,052 - -1.8 3,937,463 - Rru_A3420 0.51 +6.0 3,937,463 - Rru_A3420 0.51 +0.1 3,937,463 - Rru_A3420 0.51 +2.1 3,937,463 - Rru_A3420 0.51 +5.8 3,937,490 - Rru_A3420 0.54 +2.1 3,937,490 - Rru_A3420 0.54 +9.2 3,937,745 - Rru_A3420 0.85 +7.9 3,937,745 - Rru_A3420 0.85 -0.8 3,937,745 - Rru_A3420 0.85 -0.0 3,937,862 + -2.2 3,937,863 - +0.1 3,937,875 + +0.2 3,937,875 + -1.6 3,937,875 + -0.3 3,937,875 + -1.1 3,937,876 - -0.3 3,937,877 + +1.1 3,937,877 + -1.4 3,937,877 + -3.1 3,937,877 + -3.7 3,937,878 - +6.8 3,937,878 - +7.3 3,937,878 - +0.4 3,937,878 - +6.8
Or see this region's nucleotide sequence