Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3403

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3401 and Rru_A3402 are separated by 3 nucleotidesRru_A3402 and Rru_A3403 are separated by 17 nucleotidesRru_A3403 and Rru_A3404 are separated by 30 nucleotides Rru_A3401: Rru_A3401 - sulfate ABC transporter, permease protein CysT (NCBI), at 3,917,059 to 3,917,910 _A3401 Rru_A3402: Rru_A3402 - sulfate ABC transporter, permease protein CysW (NCBI), at 3,917,914 to 3,918,807 _A3402 Rru_A3403: Rru_A3403 - Sulphate transport system permease protein 1 (NCBI), at 3,918,825 to 3,919,895 _A3403 Rru_A3404: Rru_A3404 - trkA-C domain protein (NCBI), at 3,919,926 to 3,921,680 _A3404 Position (kb) 3918 3919 3920Strain fitness (log2 ratio) -3 -2 -1 0 1at 3920.001 kb on + strandat 3920.001 kb on + strandat 3920.329 kb on + strand, within Rru_A3404at 3920.329 kb on + strand, within Rru_A3404

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,920,001 + +0.6
3,920,001 + -1.2
3,920,329 + Rru_A3404 0.23 +0.5
3,920,329 + Rru_A3404 0.23 -2.8

Or see this region's nucleotide sequence