Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3401

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3400 and Rru_A3401 are separated by 4 nucleotidesRru_A3401 and Rru_A3402 are separated by 3 nucleotidesRru_A3402 and Rru_A3403 are separated by 17 nucleotides Rru_A3400: Rru_A3400 - Thiosulphate-binding protein (NCBI), at 3,915,990 to 3,917,054 _A3400 Rru_A3401: Rru_A3401 - sulfate ABC transporter, permease protein CysT (NCBI), at 3,917,059 to 3,917,910 _A3401 Rru_A3402: Rru_A3402 - sulfate ABC transporter, permease protein CysW (NCBI), at 3,917,914 to 3,918,807 _A3402 Rru_A3403: Rru_A3403 - Sulphate transport system permease protein 1 (NCBI), at 3,918,825 to 3,919,895 _A3403 Position (kb) 3917 3918Strain fitness (log2 ratio) -1 0 1at 3916.833 kb on + strand, within Rru_A3400at 3916.880 kb on + strand, within Rru_A3400at 3917.037 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
3,916,833 + Rru_A3400 0.79 +0.2
3,916,880 + Rru_A3400 0.84 -0.1
3,917,037 + -1.4

Or see this region's nucleotide sequence