Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3385 and Rru_A3386 are separated by 253 nucleotides Rru_A3386 and Rru_A3387 are separated by 34 nucleotides Rru_A3387 and Rru_A3388 overlap by 4 nucleotides Rru_A3388 and Rru_A3389 are separated by 24 nucleotides
Rru_A3385: Rru_A3385 - OmpA/MotB (NCBI), at 3,902,293 to 3,903,021
_A3385
Rru_A3386: Rru_A3386 - BioY protein (NCBI), at 3,903,275 to 3,903,823
_A3386
Rru_A3387: Rru_A3387 - Acetyl-CoA C-acetyltransferase (NCBI), at 3,903,858 to 3,905,018
_A3387
Rru_A3388: Rru_A3388 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI), at 3,905,015 to 3,905,938
_A3388
Rru_A3389: Rru_A3389 - Protein of unknown function DUF403 (NCBI), at 3,905,963 to 3,907,000
_A3389
Position (kb) 3903
3904
3905
3906 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 3903.017 kb on + strand at 3903.017 kb on + strand at 3903.017 kb on + strand at 3903.017 kb on + strand at 3903.017 kb on + strand at 3903.018 kb on - strand at 3903.018 kb on - strand at 3903.468 kb on + strand, within Rru_A3386 at 3903.659 kb on + strand, within Rru_A3386 at 3903.659 kb on + strand, within Rru_A3386 at 3903.660 kb on - strand, within Rru_A3386 at 3903.678 kb on - strand, within Rru_A3386 at 3905.372 kb on + strand, within Rru_A3388 at 3905.372 kb on + strand, within Rru_A3388 at 3905.372 kb on + strand, within Rru_A3388 at 3905.372 kb on + strand, within Rru_A3388 at 3905.372 kb on + strand, within Rru_A3388 at 3905.373 kb on - strand, within Rru_A3388 at 3905.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,903,017 + -1.4 3,903,017 + -1.2 3,903,017 + +2.1 3,903,017 + -0.3 3,903,017 + -1.1 3,903,018 - -1.3 3,903,018 - -2.3 3,903,468 + Rru_A3386 0.35 +0.8 3,903,659 + Rru_A3386 0.70 -0.9 3,903,659 + Rru_A3386 0.70 +1.8 3,903,660 - Rru_A3386 0.70 +7.1 3,903,678 - Rru_A3386 0.73 -0.0 3,905,372 + Rru_A3388 0.39 -0.7 3,905,372 + Rru_A3388 0.39 -0.4 3,905,372 + Rru_A3388 0.39 +0.3 3,905,372 + Rru_A3388 0.39 +1.3 3,905,372 + Rru_A3388 0.39 +0.1 3,905,373 - Rru_A3388 0.39 +0.1 3,905,965 - -2.6
Or see this region's nucleotide sequence