Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3350 and Rru_A3351 overlap by 4 nucleotides Rru_A3351 and Rru_A3352 are separated by 3 nucleotides Rru_A3352 and Rru_A3353 overlap by 4 nucleotides Rru_A3353 and Rru_A3354 are separated by 46 nucleotides
Rru_A3350: Rru_A3350 - Peptide deformylase (NCBI), at 3,864,323 to 3,864,841
_A3350
Rru_A3351: Rru_A3351 - Methionyl-tRNA formyltransferase (NCBI), at 3,864,838 to 3,865,767
_A3351
Rru_A3352: Rru_A3352 - Pseudouridylate synthase (NCBI), at 3,865,771 to 3,866,607
_A3352
Rru_A3353: Rru_A3353 - Small multidrug resistance protein (NCBI), at 3,866,604 to 3,866,924
_A3353
Rru_A3354: Rru_A3354 - Protein of unknown function DUF45 (NCBI), at 3,866,971 to 3,867,768
_A3354
Position (kb) 3865
3866
3867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3864.790 kb on + strand at 3866.654 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.779 kb on - strand, within Rru_A3353 at 3866.979 kb on - strand at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.117 kb on - strand, within Rru_A3354 at 3867.117 kb on - strand, within Rru_A3354 at 3867.496 kb on - strand, within Rru_A3354
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,864,790 + -0.6 3,866,654 + Rru_A3353 0.16 -1.7 3,866,718 + Rru_A3353 0.36 -2.0 3,866,718 + Rru_A3353 0.36 +2.0 3,866,718 + Rru_A3353 0.36 +2.0 3,866,719 - Rru_A3353 0.36 +0.3 3,866,719 - Rru_A3353 0.36 +0.8 3,866,719 - Rru_A3353 0.36 +0.4 3,866,719 - Rru_A3353 0.36 +0.6 3,866,779 - Rru_A3353 0.55 -2.3 3,866,979 - -3.0 3,867,116 + Rru_A3354 0.18 -1.7 3,867,116 + Rru_A3354 0.18 -1.9 3,867,116 + Rru_A3354 0.18 -2.4 3,867,116 + Rru_A3354 0.18 +0.4 3,867,117 - Rru_A3354 0.18 +0.7 3,867,117 - Rru_A3354 0.18 -2.2 3,867,496 - Rru_A3354 0.66 -3.1
Or see this region's nucleotide sequence