Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3349 and Rru_A3350 are separated by 142 nucleotides Rru_A3350 and Rru_A3351 overlap by 4 nucleotides Rru_A3351 and Rru_A3352 are separated by 3 nucleotides Rru_A3352 and Rru_A3353 overlap by 4 nucleotides
Rru_A3349: Rru_A3349 - transcription activator, effector binding (NCBI), at 3,863,698 to 3,864,180
_A3349
Rru_A3350: Rru_A3350 - Peptide deformylase (NCBI), at 3,864,323 to 3,864,841
_A3350
Rru_A3351: Rru_A3351 - Methionyl-tRNA formyltransferase (NCBI), at 3,864,838 to 3,865,767
_A3351
Rru_A3352: Rru_A3352 - Pseudouridylate synthase (NCBI), at 3,865,771 to 3,866,607
_A3352
Rru_A3353: Rru_A3353 - Small multidrug resistance protein (NCBI), at 3,866,604 to 3,866,924
_A3353
Position (kb)
3864
3865
3866 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3863.858 kb on - strand, within Rru_A3349 at 3863.896 kb on + strand, within Rru_A3349 at 3863.897 kb on - strand, within Rru_A3349 at 3863.897 kb on - strand, within Rru_A3349 at 3864.034 kb on + strand, within Rru_A3349 at 3864.035 kb on - strand, within Rru_A3349 at 3864.035 kb on - strand, within Rru_A3349 at 3864.094 kb on + strand, within Rru_A3349 at 3864.094 kb on + strand, within Rru_A3349 at 3864.094 kb on + strand, within Rru_A3349 at 3864.267 kb on + strand at 3864.790 kb on + strand at 3866.654 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,863,858 - Rru_A3349 0.33 -0.5 3,863,896 + Rru_A3349 0.41 -1.6 3,863,897 - Rru_A3349 0.41 -2.4 3,863,897 - Rru_A3349 0.41 -2.7 3,864,034 + Rru_A3349 0.70 +0.4 3,864,035 - Rru_A3349 0.70 -0.3 3,864,035 - Rru_A3349 0.70 -2.3 3,864,094 + Rru_A3349 0.82 -2.3 3,864,094 + Rru_A3349 0.82 +0.1 3,864,094 + Rru_A3349 0.82 -2.7 3,864,267 + -2.3 3,864,790 + -0.6 3,866,654 + Rru_A3353 0.16 -1.7 3,866,718 + Rru_A3353 0.36 -2.0 3,866,718 + Rru_A3353 0.36 +2.0 3,866,718 + Rru_A3353 0.36 +2.0 3,866,719 - Rru_A3353 0.36 +0.3 3,866,719 - Rru_A3353 0.36 +0.8 3,866,719 - Rru_A3353 0.36 +0.4 3,866,719 - Rru_A3353 0.36 +0.6
Or see this region's nucleotide sequence