Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3351

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3349 and Rru_A3350 are separated by 142 nucleotidesRru_A3350 and Rru_A3351 overlap by 4 nucleotidesRru_A3351 and Rru_A3352 are separated by 3 nucleotidesRru_A3352 and Rru_A3353 overlap by 4 nucleotides Rru_A3349: Rru_A3349 - transcription activator, effector binding (NCBI), at 3,863,698 to 3,864,180 _A3349 Rru_A3350: Rru_A3350 - Peptide deformylase (NCBI), at 3,864,323 to 3,864,841 _A3350 Rru_A3351: Rru_A3351 - Methionyl-tRNA formyltransferase (NCBI), at 3,864,838 to 3,865,767 _A3351 Rru_A3352: Rru_A3352 - Pseudouridylate synthase (NCBI), at 3,865,771 to 3,866,607 _A3352 Rru_A3353: Rru_A3353 - Small multidrug resistance protein (NCBI), at 3,866,604 to 3,866,924 _A3353 Position (kb) 3864 3865 3866Strain fitness (log2 ratio) -2 -1 0 1 2at 3863.858 kb on - strand, within Rru_A3349at 3863.896 kb on + strand, within Rru_A3349at 3863.897 kb on - strand, within Rru_A3349at 3863.897 kb on - strand, within Rru_A3349at 3864.034 kb on + strand, within Rru_A3349at 3864.035 kb on - strand, within Rru_A3349at 3864.035 kb on - strand, within Rru_A3349at 3864.094 kb on + strand, within Rru_A3349at 3864.094 kb on + strand, within Rru_A3349at 3864.094 kb on + strand, within Rru_A3349at 3864.267 kb on + strandat 3864.790 kb on + strandat 3866.654 kb on + strand, within Rru_A3353at 3866.718 kb on + strand, within Rru_A3353at 3866.718 kb on + strand, within Rru_A3353at 3866.718 kb on + strand, within Rru_A3353at 3866.719 kb on - strand, within Rru_A3353at 3866.719 kb on - strand, within Rru_A3353at 3866.719 kb on - strand, within Rru_A3353at 3866.719 kb on - strand, within Rru_A3353

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,863,858 - Rru_A3349 0.33 -0.5
3,863,896 + Rru_A3349 0.41 -1.6
3,863,897 - Rru_A3349 0.41 -2.4
3,863,897 - Rru_A3349 0.41 -2.7
3,864,034 + Rru_A3349 0.70 +0.4
3,864,035 - Rru_A3349 0.70 -0.3
3,864,035 - Rru_A3349 0.70 -2.3
3,864,094 + Rru_A3349 0.82 -2.3
3,864,094 + Rru_A3349 0.82 +0.1
3,864,094 + Rru_A3349 0.82 -2.7
3,864,267 + -2.3
3,864,790 + -0.6
3,866,654 + Rru_A3353 0.16 -1.7
3,866,718 + Rru_A3353 0.36 -2.0
3,866,718 + Rru_A3353 0.36 +2.0
3,866,718 + Rru_A3353 0.36 +2.0
3,866,719 - Rru_A3353 0.36 +0.3
3,866,719 - Rru_A3353 0.36 +0.8
3,866,719 - Rru_A3353 0.36 +0.4
3,866,719 - Rru_A3353 0.36 +0.6

Or see this region's nucleotide sequence