Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3340

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3339 and Rru_A3340 are separated by 4 nucleotidesRru_A3340 and Rru_A3341 are separated by 93 nucleotides Rru_A3339: Rru_A3339 - 60 kDa inner membrane insertion protein (NCBI), at 3,850,574 to 3,852,361 _A3339 Rru_A3340: Rru_A3340 - GTP-binding (NCBI), at 3,852,366 to 3,853,061 _A3340 Rru_A3341: Rru_A3341 - Acetylglutamate kinase (NCBI), at 3,853,155 to 3,854,087 _A3341 Position (kb) 3852 3853 3854Strain fitness (log2 ratio) -3 -2 -1 0 1at 3852.359 kb on + strandat 3853.218 kb on - strandat 3853.248 kb on + strandat 3853.248 kb on + strandat 3853.249 kb on - strand, within Rru_A3341at 3853.249 kb on - strand, within Rru_A3341at 3853.250 kb on + strand, within Rru_A3341at 3853.288 kb on - strand, within Rru_A3341at 3853.288 kb on - strand, within Rru_A3341

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,852,359 + -3.0
3,853,218 - -1.6
3,853,248 + -2.2
3,853,248 + -1.4
3,853,249 - Rru_A3341 0.10 -0.6
3,853,249 - Rru_A3341 0.10 +0.3
3,853,250 + Rru_A3341 0.10 +0.4
3,853,288 - Rru_A3341 0.14 +0.0
3,853,288 - Rru_A3341 0.14 -2.4

Or see this region's nucleotide sequence