Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3336 and Rru_A3337 are separated by 31 nucleotides Rru_A3337 and Rru_A3338 overlap by 4 nucleotides Rru_A3338 and Rru_A3339 are separated by 77 nucleotides Rru_A3339 and Rru_A3340 are separated by 4 nucleotides Rru_A3340 and Rru_A3341 are separated by 93 nucleotides
Rru_A3336: Rru_A3336 - Ribosomal protein L34 (NCBI), at 3,849,462 to 3,849,596
_A3336
Rru_A3337: Rru_A3337 - ribonuclease P protein (NCBI), at 3,849,628 to 3,850,152
_A3337
Rru_A3338: Rru_A3338 - Protein of unknown function DUF37 (NCBI), at 3,850,149 to 3,850,496
_A3338
Rru_A3339: Rru_A3339 - 60 kDa inner membrane insertion protein (NCBI), at 3,850,574 to 3,852,361
_A3339
Rru_A3340: Rru_A3340 - GTP-binding (NCBI), at 3,852,366 to 3,853,061
_A3340
Rru_A3341: Rru_A3341 - Acetylglutamate kinase (NCBI), at 3,853,155 to 3,854,087
_A3341
Position (kb) 3850
3851
3852
3853 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3850.129 kb on - strand at 3850.136 kb on + strand at 3850.275 kb on + strand, within Rru_A3338 at 3850.276 kb on - strand, within Rru_A3338 at 3850.494 kb on + strand at 3850.494 kb on + strand at 3850.494 kb on + strand at 3852.359 kb on + strand at 3853.218 kb on - strand at 3853.248 kb on + strand at 3853.248 kb on + strand at 3853.249 kb on - strand, within Rru_A3341 at 3853.249 kb on - strand, within Rru_A3341 at 3853.250 kb on + strand, within Rru_A3341 at 3853.288 kb on - strand, within Rru_A3341 at 3853.288 kb on - strand, within Rru_A3341
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,850,129 - -0.6 3,850,136 + -2.9 3,850,275 + Rru_A3338 0.36 -0.2 3,850,276 - Rru_A3338 0.36 +2.0 3,850,494 + -2.4 3,850,494 + -0.1 3,850,494 + +0.2 3,852,359 + -3.0 3,853,218 - -1.6 3,853,248 + -2.2 3,853,248 + -1.4 3,853,249 - Rru_A3341 0.10 -0.6 3,853,249 - Rru_A3341 0.10 +0.3 3,853,250 + Rru_A3341 0.10 +0.4 3,853,288 - Rru_A3341 0.14 +0.0 3,853,288 - Rru_A3341 0.14 -2.4
Or see this region's nucleotide sequence