Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3330 and Rru_A3331 are separated by 235 nucleotides Rru_A3331 and Rru_A3332 are separated by 14 nucleotides Rru_A3332 and Rru_A3333 are separated by 394 nucleotides
Rru_A3330: Rru_A3330 - Cytochrome c oxidase cbb3-type, subunit III (NCBI), at 3,841,926 to 3,842,801
_A3330
Rru_A3331: Rru_A3331 - Cytochrome C oxidase, mono-heme subunit/FixO (NCBI), at 3,843,037 to 3,843,780
_A3331
Rru_A3332: Rru_A3332 - Cytochrome c oxidase cbb3-type, subunit I (NCBI), at 3,843,795 to 3,845,285
_A3332
Rru_A3333: Rru_A3333 - hypothetical protein (NCBI), at 3,845,680 to 3,846,930
_A3333
Position (kb) 3843
3844
3845
3846 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3842.846 kb on + strand at 3843.627 kb on - strand, within Rru_A3331 at 3844.114 kb on + strand, within Rru_A3332 at 3845.299 kb on - strand at 3845.309 kb on - strand at 3845.409 kb on - strand at 3845.568 kb on - strand at 3845.600 kb on - strand at 3845.695 kb on - strand at 3846.046 kb on + strand, within Rru_A3333 at 3846.047 kb on - strand, within Rru_A3333 at 3846.047 kb on - strand, within Rru_A3333
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,842,846 + +2.0 3,843,627 - Rru_A3331 0.79 +0.0 3,844,114 + Rru_A3332 0.21 -1.4 3,845,299 - +0.3 3,845,309 - +1.5 3,845,409 - +0.1 3,845,568 - +1.6 3,845,600 - +1.4 3,845,695 - +0.5 3,846,046 + Rru_A3333 0.29 +0.1 3,846,047 - Rru_A3333 0.29 -2.9 3,846,047 - Rru_A3333 0.29 +1.4
Or see this region's nucleotide sequence