Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3331

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3330 and Rru_A3331 are separated by 235 nucleotidesRru_A3331 and Rru_A3332 are separated by 14 nucleotides Rru_A3330: Rru_A3330 - Cytochrome c oxidase cbb3-type, subunit III (NCBI), at 3,841,926 to 3,842,801 _A3330 Rru_A3331: Rru_A3331 - Cytochrome C oxidase, mono-heme subunit/FixO (NCBI), at 3,843,037 to 3,843,780 _A3331 Rru_A3332: Rru_A3332 - Cytochrome c oxidase cbb3-type, subunit I (NCBI), at 3,843,795 to 3,845,285 _A3332 Position (kb) 3843 3844Strain fitness (log2 ratio) -1 0 1 2at 3842.225 kb on - strand, within Rru_A3330at 3842.687 kb on - strand, within Rru_A3330at 3842.846 kb on + strandat 3843.627 kb on - strand, within Rru_A3331at 3844.114 kb on + strand, within Rru_A3332

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,842,225 - Rru_A3330 0.34 -1.1
3,842,687 - Rru_A3330 0.87 +2.5
3,842,846 + +2.0
3,843,627 - Rru_A3331 0.79 +0.0
3,844,114 + Rru_A3332 0.21 -1.4

Or see this region's nucleotide sequence