Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3329 and Rru_A3330 are separated by 99 nucleotides Rru_A3330 and Rru_A3331 are separated by 235 nucleotides Rru_A3331 and Rru_A3332 are separated by 14 nucleotides
Rru_A3329: Rru_A3329 - hypothetical protein (NCBI), at 3,840,540 to 3,841,826
_A3329
Rru_A3330: Rru_A3330 - Cytochrome c oxidase cbb3-type, subunit III (NCBI), at 3,841,926 to 3,842,801
_A3330
Rru_A3331: Rru_A3331 - Cytochrome C oxidase, mono-heme subunit/FixO (NCBI), at 3,843,037 to 3,843,780
_A3331
Rru_A3332: Rru_A3332 - Cytochrome c oxidase cbb3-type, subunit I (NCBI), at 3,843,795 to 3,845,285
_A3332
Position (kb)
3841
3842
3843 Strain fitness (log2 ratio)
-1
0
1
2 at 3840.955 kb on - strand, within Rru_A3329 at 3840.956 kb on + strand, within Rru_A3329 at 3840.957 kb on - strand, within Rru_A3329 at 3841.107 kb on + strand, within Rru_A3329 at 3841.107 kb on + strand, within Rru_A3329 at 3841.185 kb on + strand, within Rru_A3329 at 3841.191 kb on + strand, within Rru_A3329 at 3841.742 kb on + strand at 3841.743 kb on - strand at 3841.743 kb on - strand at 3841.743 kb on - strand at 3841.824 kb on + strand at 3841.824 kb on + strand at 3842.225 kb on - strand, within Rru_A3330 at 3842.687 kb on - strand, within Rru_A3330 at 3842.846 kb on + strand at 3843.627 kb on - strand, within Rru_A3331
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,840,955 - Rru_A3329 0.32 +1.0 3,840,956 + Rru_A3329 0.32 -0.6 3,840,957 - Rru_A3329 0.32 +2.4 3,841,107 + Rru_A3329 0.44 -0.3 3,841,107 + Rru_A3329 0.44 -0.8 3,841,185 + Rru_A3329 0.50 +1.5 3,841,191 + Rru_A3329 0.51 -0.8 3,841,742 + +0.9 3,841,743 - -1.0 3,841,743 - +1.4 3,841,743 - -0.0 3,841,824 + +1.4 3,841,824 + -0.3 3,842,225 - Rru_A3330 0.34 -1.1 3,842,687 - Rru_A3330 0.87 +2.5 3,842,846 + +2.0 3,843,627 - Rru_A3331 0.79 +0.0
Or see this region's nucleotide sequence