Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3326

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3324 and Rru_A3325 are separated by 10 nucleotidesRru_A3325 and Rru_A3326 are separated by 150 nucleotidesRru_A3326 and Rru_A3327 are separated by 498 nucleotides Rru_A3324: Rru_A3324 - copper-translocating P-type ATPase (NCBI), at 3,833,135 to 3,835,564 _A3324 Rru_A3325: Rru_A3325 - integral membrane protein linked to a cation pump-like (NCBI), at 3,835,575 to 3,836,084 _A3325 Rru_A3326: Rru_A3326 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 3,836,235 to 3,837,755 _A3326 Rru_A3327: Rru_A3327 - hypothetical protein (NCBI), at 3,838,254 to 3,839,444 _A3327 Position (kb) 3836 3837 3838Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3835.924 kb on + strand, within Rru_A3325at 3836.048 kb on - strandat 3836.085 kb on - strandat 3836.085 kb on - strandat 3836.229 kb on - strandat 3836.229 kb on - strandat 3837.632 kb on - strandat 3837.715 kb on - strandat 3837.773 kb on - strandat 3837.773 kb on - strandat 3837.840 kb on - strandat 3837.840 kb on - strandat 3837.925 kb on + strandat 3837.925 kb on + strandat 3837.926 kb on - strandat 3837.927 kb on + strandat 3837.937 kb on + strandat 3837.937 kb on + strandat 3837.937 kb on + strandat 3837.965 kb on + strandat 3837.965 kb on + strandat 3837.966 kb on - strandat 3837.966 kb on - strandat 3837.966 kb on - strandat 3837.983 kb on - strandat 3837.983 kb on - strandat 3837.984 kb on + strandat 3837.984 kb on + strandat 3837.985 kb on - strandat 3838.036 kb on - strandat 3838.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,835,924 + Rru_A3325 0.68 +1.0
3,836,048 - -1.6
3,836,085 - -2.4
3,836,085 - +1.7
3,836,229 - -0.5
3,836,229 - -0.7
3,837,632 - +0.6
3,837,715 - -0.8
3,837,773 - -0.2
3,837,773 - -0.3
3,837,840 - +0.5
3,837,840 - +1.6
3,837,925 + +0.5
3,837,925 + +0.5
3,837,926 - +0.1
3,837,927 + +0.2
3,837,937 + -1.3
3,837,937 + -0.6
3,837,937 + -0.5
3,837,965 + +0.4
3,837,965 + +0.2
3,837,966 - +2.0
3,837,966 - -1.1
3,837,966 - +1.2
3,837,983 - -1.8
3,837,983 - -2.6
3,837,984 + -1.8
3,837,984 + +0.4
3,837,985 - +3.9
3,838,036 - +2.0
3,838,103 - -4.0

Or see this region's nucleotide sequence