Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3324 and Rru_A3325 are separated by 10 nucleotides Rru_A3325 and Rru_A3326 are separated by 150 nucleotides Rru_A3326 and Rru_A3327 are separated by 498 nucleotides
Rru_A3324: Rru_A3324 - copper-translocating P-type ATPase (NCBI), at 3,833,135 to 3,835,564
_A3324
Rru_A3325: Rru_A3325 - integral membrane protein linked to a cation pump-like (NCBI), at 3,835,575 to 3,836,084
_A3325
Rru_A3326: Rru_A3326 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 3,836,235 to 3,837,755
_A3326
Rru_A3327: Rru_A3327 - hypothetical protein (NCBI), at 3,838,254 to 3,839,444
_A3327
Position (kb)
3836
3837
3838 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3835.924 kb on + strand, within Rru_A3325 at 3836.048 kb on - strand at 3836.085 kb on - strand at 3836.085 kb on - strand at 3836.229 kb on - strand at 3836.229 kb on - strand at 3837.632 kb on - strand at 3837.715 kb on - strand at 3837.773 kb on - strand at 3837.773 kb on - strand at 3837.840 kb on - strand at 3837.840 kb on - strand at 3837.925 kb on + strand at 3837.925 kb on + strand at 3837.926 kb on - strand at 3837.927 kb on + strand at 3837.937 kb on + strand at 3837.937 kb on + strand at 3837.937 kb on + strand at 3837.965 kb on + strand at 3837.965 kb on + strand at 3837.966 kb on - strand at 3837.966 kb on - strand at 3837.966 kb on - strand at 3837.983 kb on - strand at 3837.983 kb on - strand at 3837.984 kb on + strand at 3837.984 kb on + strand at 3837.985 kb on - strand at 3838.036 kb on - strand at 3838.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,835,924 + Rru_A3325 0.68 +1.0 3,836,048 - -1.6 3,836,085 - -2.4 3,836,085 - +1.7 3,836,229 - -0.5 3,836,229 - -0.7 3,837,632 - +0.6 3,837,715 - -0.8 3,837,773 - -0.2 3,837,773 - -0.3 3,837,840 - +0.5 3,837,840 - +1.6 3,837,925 + +0.5 3,837,925 + +0.5 3,837,926 - +0.1 3,837,927 + +0.2 3,837,937 + -1.3 3,837,937 + -0.6 3,837,937 + -0.5 3,837,965 + +0.4 3,837,965 + +0.2 3,837,966 - +2.0 3,837,966 - -1.1 3,837,966 - +1.2 3,837,983 - -1.8 3,837,983 - -2.6 3,837,984 + -1.8 3,837,984 + +0.4 3,837,985 - +3.9 3,838,036 - +2.0 3,838,103 - -4.0
Or see this region's nucleotide sequence