Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3325

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3324 and Rru_A3325 are separated by 10 nucleotidesRru_A3325 and Rru_A3326 are separated by 150 nucleotides Rru_A3324: Rru_A3324 - copper-translocating P-type ATPase (NCBI), at 3,833,135 to 3,835,564 _A3324 Rru_A3325: Rru_A3325 - integral membrane protein linked to a cation pump-like (NCBI), at 3,835,575 to 3,836,084 _A3325 Rru_A3326: Rru_A3326 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 3,836,235 to 3,837,755 _A3326 Position (kb) 3835 3836 3837Strain fitness (log2 ratio) -2 -1 0 1at 3835.924 kb on + strand, within Rru_A3325at 3836.048 kb on - strandat 3836.085 kb on - strandat 3836.085 kb on - strandat 3836.229 kb on - strandat 3836.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,835,924 + Rru_A3325 0.68 +1.0
3,836,048 - -1.6
3,836,085 - -2.4
3,836,085 - +1.7
3,836,229 - -0.5
3,836,229 - -0.7

Or see this region's nucleotide sequence