Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3288

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3286 and Rru_A3287 are separated by 14 nucleotidesRru_A3287 and Rru_A3288 are separated by 95 nucleotidesRru_A3288 and Rru_A3289 are separated by 61 nucleotides Rru_A3286: Rru_A3286 - hypothetical protein (NCBI), at 3,782,459 to 3,782,908 _A3286 Rru_A3287: Rru_A3287 - Sigma-24 (FecI) (NCBI), at 3,782,923 to 3,783,759 _A3287 Rru_A3288: Rru_A3288 - Signal Transduction Histidine Kinase (NCBI), at 3,783,855 to 3,785,843 _A3288 Rru_A3289: Rru_A3289 - Diacylglycerol kinase, catalytic region (NCBI), at 3,785,905 to 3,786,972 _A3289 Position (kb) 3783 3784 3785 3786Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3783.335 kb on - strand, within Rru_A3287at 3783.830 kb on + strandat 3785.912 kb on + strandat 3785.912 kb on + strandat 3785.912 kb on + strandat 3785.913 kb on - strandat 3786.667 kb on + strand, within Rru_A3289at 3786.668 kb on - strand, within Rru_A3289at 3786.786 kb on + strand, within Rru_A3289at 3786.786 kb on + strand, within Rru_A3289

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,783,335 - Rru_A3287 0.49 +1.0
3,783,830 + +0.5
3,785,912 + +1.6
3,785,912 + -1.0
3,785,912 + +0.1
3,785,913 - +2.8
3,786,667 + Rru_A3289 0.71 +0.9
3,786,668 - Rru_A3289 0.71 -1.1
3,786,786 + Rru_A3289 0.82 -0.2
3,786,786 + Rru_A3289 0.82 -1.9

Or see this region's nucleotide sequence