Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3287

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3285 and Rru_A3286 are separated by 451 nucleotidesRru_A3286 and Rru_A3287 are separated by 14 nucleotidesRru_A3287 and Rru_A3288 are separated by 95 nucleotides Rru_A3285: Rru_A3285 - Response regulator receiver domain protein (CheY) (NCBI), at 3,781,210 to 3,782,007 _A3285 Rru_A3286: Rru_A3286 - hypothetical protein (NCBI), at 3,782,459 to 3,782,908 _A3286 Rru_A3287: Rru_A3287 - Sigma-24 (FecI) (NCBI), at 3,782,923 to 3,783,759 _A3287 Rru_A3288: Rru_A3288 - Signal Transduction Histidine Kinase (NCBI), at 3,783,855 to 3,785,843 _A3288 Position (kb) 3782 3783 3784Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3782.024 kb on + strandat 3782.025 kb on - strandat 3782.025 kb on - strandat 3782.030 kb on + strandat 3782.031 kb on - strandat 3782.031 kb on - strandat 3782.065 kb on - strandat 3782.140 kb on + strandat 3782.301 kb on - strandat 3782.357 kb on + strandat 3782.386 kb on + strandat 3782.386 kb on + strandat 3783.335 kb on - strand, within Rru_A3287at 3783.830 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,782,024 + -0.5
3,782,025 - -1.0
3,782,025 - -3.2
3,782,030 + +1.0
3,782,031 - -2.7
3,782,031 - -1.5
3,782,065 - -1.7
3,782,140 + +0.0
3,782,301 - +1.8
3,782,357 + -1.4
3,782,386 + -1.9
3,782,386 + -0.3
3,783,335 - Rru_A3287 0.49 +1.0
3,783,830 + +0.5

Or see this region's nucleotide sequence