Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3279

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3278 and Rru_A3279 are separated by 264 nucleotidesRru_A3279 and Rru_A3280 are separated by 258 nucleotidesRru_A3280 and Rru_A3281 are separated by 1 nucleotides Rru_A3278: Rru_A3278 - ADP-L-glycero-D-manno-heptose-6-epimerase (NCBI), at 3,776,040 to 3,777,023 _A3278 Rru_A3279: Rru_A3279 - Protein of unknown function DUF526 (NCBI), at 3,777,288 to 3,777,656 _A3279 Rru_A3280: Rru_A3280 - hypothetical protein (NCBI), at 3,777,915 to 3,778,415 _A3280 Rru_A3281: Rru_A3281 - Delta 1-pyrroline-5-carboxylate reductase (NCBI), at 3,778,417 to 3,779,241 _A3281 Position (kb) 3777 3778Strain fitness (log2 ratio) -3 -2 -1 0 1at 3777.082 kb on + strandat 3777.083 kb on - strandat 3777.083 kb on - strandat 3777.083 kb on - strandat 3777.083 kb on - strandat 3777.083 kb on - strandat 3777.084 kb on + strandat 3777.084 kb on + strandat 3777.084 kb on + strandat 3777.085 kb on - strandat 3777.085 kb on - strandat 3777.085 kb on - strandat 3777.085 kb on - strandat 3777.085 kb on - strandat 3777.202 kb on + strandat 3777.202 kb on + strandat 3777.262 kb on + strandat 3777.263 kb on - strandat 3777.654 kb on + strandat 3777.654 kb on + strandat 3778.059 kb on + strand, within Rru_A3280at 3778.326 kb on + strand, within Rru_A3280at 3778.326 kb on + strand, within Rru_A3280

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,777,082 + +1.3
3,777,083 - +0.1
3,777,083 - -2.9
3,777,083 - +1.3
3,777,083 - +1.3
3,777,083 - -1.1
3,777,084 + +0.2
3,777,084 + -0.2
3,777,084 + +1.7
3,777,085 - -1.0
3,777,085 - +0.4
3,777,085 - +0.0
3,777,085 - -0.4
3,777,085 - +0.0
3,777,202 + +0.9
3,777,202 + +1.2
3,777,262 + -1.7
3,777,263 - -0.3
3,777,654 + -1.7
3,777,654 + +0.0
3,778,059 + Rru_A3280 0.29 +0.4
3,778,326 + Rru_A3280 0.82 -0.3
3,778,326 + Rru_A3280 0.82 -1.1

Or see this region's nucleotide sequence