Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3278

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3277 and Rru_A3278 are separated by 229 nucleotidesRru_A3278 and Rru_A3279 are separated by 264 nucleotidesRru_A3279 and Rru_A3280 are separated by 258 nucleotides Rru_A3277: Rru_A3277 - Acetylornithine and succinylornithine aminotransferase (NCBI), at 3,774,620 to 3,775,810 _A3277 Rru_A3278: Rru_A3278 - ADP-L-glycero-D-manno-heptose-6-epimerase (NCBI), at 3,776,040 to 3,777,023 _A3278 Rru_A3279: Rru_A3279 - Protein of unknown function DUF526 (NCBI), at 3,777,288 to 3,777,656 _A3279 Rru_A3280: Rru_A3280 - hypothetical protein (NCBI), at 3,777,915 to 3,778,415 _A3280 Position (kb) 3776 3777 3778Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3775.215 kb on + strand, within Rru_A3277at 3775.215 kb on + strand, within Rru_A3277at 3775.216 kb on - strand, within Rru_A3277at 3775.216 kb on - strand, within Rru_A3277at 3775.216 kb on - strand, within Rru_A3277at 3775.780 kb on - strandat 3775.780 kb on - strandat 3775.780 kb on - strandat 3775.826 kb on + strandat 3775.826 kb on + strandat 3775.827 kb on - strandat 3775.827 kb on - strandat 3775.834 kb on + strandat 3775.834 kb on + strandat 3775.897 kb on + strandat 3775.898 kb on - strandat 3775.928 kb on + strandat 3775.928 kb on + strandat 3775.928 kb on + strandat 3775.928 kb on + strandat 3775.928 kb on + strandat 3775.928 kb on + strandat 3775.985 kb on - strandat 3777.082 kb on + strandat 3777.083 kb on - strandat 3777.083 kb on - strandat 3777.083 kb on - strandat 3777.083 kb on - strandat 3777.083 kb on - strandat 3777.084 kb on + strandat 3777.084 kb on + strandat 3777.084 kb on + strandat 3777.085 kb on - strandat 3777.085 kb on - strandat 3777.085 kb on - strandat 3777.085 kb on - strandat 3777.085 kb on - strandat 3777.202 kb on + strandat 3777.202 kb on + strandat 3777.262 kb on + strandat 3777.263 kb on - strandat 3777.654 kb on + strandat 3777.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,775,215 + Rru_A3277 0.50 -2.2
3,775,215 + Rru_A3277 0.50 -2.6
3,775,216 - Rru_A3277 0.50 -2.6
3,775,216 - Rru_A3277 0.50 -3.1
3,775,216 - Rru_A3277 0.50 +0.0
3,775,780 - -0.8
3,775,780 - -2.0
3,775,780 - -2.1
3,775,826 + -2.4
3,775,826 + -1.0
3,775,827 - -2.0
3,775,827 - -3.3
3,775,834 + -1.8
3,775,834 + -0.6
3,775,897 + -1.9
3,775,898 - -1.4
3,775,928 + -0.4
3,775,928 + +0.4
3,775,928 + +1.1
3,775,928 + -0.6
3,775,928 + +1.7
3,775,928 + -0.1
3,775,985 - +3.4
3,777,082 + +1.3
3,777,083 - +0.1
3,777,083 - -2.9
3,777,083 - +1.3
3,777,083 - +1.3
3,777,083 - -1.1
3,777,084 + +0.2
3,777,084 + -0.2
3,777,084 + +1.7
3,777,085 - -1.0
3,777,085 - +0.4
3,777,085 - +0.0
3,777,085 - -0.4
3,777,085 - +0.0
3,777,202 + +0.9
3,777,202 + +1.2
3,777,262 + -1.7
3,777,263 - -0.3
3,777,654 + -1.7
3,777,654 + +0.0

Or see this region's nucleotide sequence