Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3277 and Rru_A3278 are separated by 229 nucleotides Rru_A3278 and Rru_A3279 are separated by 264 nucleotides Rru_A3279 and Rru_A3280 are separated by 258 nucleotides
Rru_A3277: Rru_A3277 - Acetylornithine and succinylornithine aminotransferase (NCBI), at 3,774,620 to 3,775,810
_A3277
Rru_A3278: Rru_A3278 - ADP-L-glycero-D-manno-heptose-6-epimerase (NCBI), at 3,776,040 to 3,777,023
_A3278
Rru_A3279: Rru_A3279 - Protein of unknown function DUF526 (NCBI), at 3,777,288 to 3,777,656
_A3279
Rru_A3280: Rru_A3280 - hypothetical protein (NCBI), at 3,777,915 to 3,778,415
_A3280
Position (kb)
3776
3777
3778 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3775.215 kb on + strand, within Rru_A3277 at 3775.215 kb on + strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.780 kb on - strand at 3775.780 kb on - strand at 3775.780 kb on - strand at 3775.826 kb on + strand at 3775.826 kb on + strand at 3775.827 kb on - strand at 3775.827 kb on - strand at 3775.834 kb on + strand at 3775.834 kb on + strand at 3775.897 kb on + strand at 3775.898 kb on - strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.985 kb on - strand at 3777.082 kb on + strand at 3777.083 kb on - strand at 3777.083 kb on - strand at 3777.083 kb on - strand at 3777.083 kb on - strand at 3777.083 kb on - strand at 3777.084 kb on + strand at 3777.084 kb on + strand at 3777.084 kb on + strand at 3777.085 kb on - strand at 3777.085 kb on - strand at 3777.085 kb on - strand at 3777.085 kb on - strand at 3777.085 kb on - strand at 3777.202 kb on + strand at 3777.202 kb on + strand at 3777.262 kb on + strand at 3777.263 kb on - strand at 3777.654 kb on + strand at 3777.654 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,775,215 + Rru_A3277 0.50 -2.2 3,775,215 + Rru_A3277 0.50 -2.6 3,775,216 - Rru_A3277 0.50 -2.6 3,775,216 - Rru_A3277 0.50 -3.1 3,775,216 - Rru_A3277 0.50 +0.0 3,775,780 - -0.8 3,775,780 - -2.0 3,775,780 - -2.1 3,775,826 + -2.4 3,775,826 + -1.0 3,775,827 - -2.0 3,775,827 - -3.3 3,775,834 + -1.8 3,775,834 + -0.6 3,775,897 + -1.9 3,775,898 - -1.4 3,775,928 + -0.4 3,775,928 + +0.4 3,775,928 + +1.1 3,775,928 + -0.6 3,775,928 + +1.7 3,775,928 + -0.1 3,775,985 - +3.4 3,777,082 + +1.3 3,777,083 - +0.1 3,777,083 - -2.9 3,777,083 - +1.3 3,777,083 - +1.3 3,777,083 - -1.1 3,777,084 + +0.2 3,777,084 + -0.2 3,777,084 + +1.7 3,777,085 - -1.0 3,777,085 - +0.4 3,777,085 - +0.0 3,777,085 - -0.4 3,777,085 - +0.0 3,777,202 + +0.9 3,777,202 + +1.2 3,777,262 + -1.7 3,777,263 - -0.3 3,777,654 + -1.7 3,777,654 + +0.0
Or see this region's nucleotide sequence