Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3248

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3246 and Rru_A3247 overlap by 8 nucleotidesRru_A3247 and Rru_A3248 are separated by 198 nucleotidesRru_A3248 and Rru_A3249 are separated by 11 nucleotidesRru_A3249 and Rru_A3250 are separated by 57 nucleotides Rru_A3246: Rru_A3246 - H+-transporting two-sector ATPase, A subunit (NCBI), at 3,740,381 to 3,741,106 _A3246 Rru_A3247: Rru_A3247 - hypothetical protein (NCBI), at 3,741,099 to 3,741,470 _A3247 Rru_A3248: Rru_A3248 - Chromosome segregation protein SMC (NCBI), at 3,741,669 to 3,745,172 _A3248 Rru_A3249: Rru_A3249 - DSBA oxidoreductase (NCBI), at 3,745,184 to 3,745,837 _A3249 Rru_A3250: Rru_A3250 - Protein of unknown function DUF1159 (NCBI), at 3,745,895 to 3,746,467 _A3250 Position (kb) 3741 3742 3743 3744 3745 3746Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3741.191 kb on - strand, within Rru_A3247at 3741.671 kb on - strandat 3745.838 kb on + strandat 3745.839 kb on - strandat 3745.839 kb on - strandat 3745.840 kb on + strandat 3745.840 kb on + strandat 3745.840 kb on + strandat 3745.840 kb on + strandat 3745.840 kb on + strandat 3745.841 kb on - strandat 3745.841 kb on - strandat 3745.841 kb on - strandat 3745.842 kb on + strandat 3745.842 kb on + strandat 3745.842 kb on + strandat 3745.842 kb on + strandat 3745.842 kb on + strandat 3745.843 kb on - strandat 3745.843 kb on - strandat 3745.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,741,191 - Rru_A3247 0.25 -1.9
3,741,671 - -2.2
3,745,838 + -0.7
3,745,839 - -1.2
3,745,839 - +1.4
3,745,840 + +1.9
3,745,840 + +0.8
3,745,840 + +0.1
3,745,840 + -0.7
3,745,840 + +0.4
3,745,841 - +0.6
3,745,841 - -1.0
3,745,841 - +1.4
3,745,842 + -0.8
3,745,842 + +1.1
3,745,842 + -3.0
3,745,842 + +0.6
3,745,842 + -1.0
3,745,843 - -2.1
3,745,843 - -4.1
3,745,843 - -1.6

Or see this region's nucleotide sequence