Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3247

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3245 and Rru_A3246 are separated by 100 nucleotidesRru_A3246 and Rru_A3247 overlap by 8 nucleotidesRru_A3247 and Rru_A3248 are separated by 198 nucleotides Rru_A3245: Rru_A3245 - H+-transporting two-sector ATPase, C subunit (NCBI), at 3,740,053 to 3,740,280 _A3245 Rru_A3246: Rru_A3246 - H+-transporting two-sector ATPase, A subunit (NCBI), at 3,740,381 to 3,741,106 _A3246 Rru_A3247: Rru_A3247 - hypothetical protein (NCBI), at 3,741,099 to 3,741,470 _A3247 Rru_A3248: Rru_A3248 - Chromosome segregation protein SMC (NCBI), at 3,741,669 to 3,745,172 _A3248 Position (kb) 3741 3742Strain fitness (log2 ratio) -2 -1 0 1at 3741.191 kb on - strand, within Rru_A3247at 3741.671 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
3,741,191 - Rru_A3247 0.25 -1.9
3,741,671 - -2.2

Or see this region's nucleotide sequence