Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3244

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3242 and Rru_A3243 are separated by 409 nucleotidesRru_A3243 and Rru_A3244 are separated by 5 nucleotidesRru_A3244 and Rru_A3245 are separated by 217 nucleotidesRru_A3245 and Rru_A3246 are separated by 100 nucleotides Rru_A3242: Rru_A3242 - Transcriptional Regulator, XRE family (NCBI), at 3,737,937 to 3,738,386 _A3242 Rru_A3243: Rru_A3243 - H+-transporting two-sector ATPase, B/B' subunit (NCBI), at 3,738,796 to 3,739,344 _A3243 Rru_A3244: Rru_A3244 - H+-transporting two-sector ATPase, B/B' subunit (NCBI), at 3,739,350 to 3,739,835 _A3244 Rru_A3245: Rru_A3245 - H+-transporting two-sector ATPase, C subunit (NCBI), at 3,740,053 to 3,740,280 _A3245 Rru_A3246: Rru_A3246 - H+-transporting two-sector ATPase, A subunit (NCBI), at 3,740,381 to 3,741,106 _A3246 Position (kb) 3739 3740Strain fitness (log2 ratio) -2 -1 0 1at 3738.399 kb on - strandat 3738.571 kb on + strandat 3738.687 kb on + strandat 3738.734 kb on + strandat 3739.858 kb on - strandat 3739.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,738,399 - -2.0
3,738,571 + +1.4
3,738,687 + +0.8
3,738,734 + -2.5
3,739,858 - -2.2
3,739,858 - -0.6

Or see this region's nucleotide sequence