Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3241 and Rru_A3242 are separated by 43 nucleotides Rru_A3242 and Rru_A3243 are separated by 409 nucleotides Rru_A3243 and Rru_A3244 are separated by 5 nucleotides Rru_A3244 and Rru_A3245 are separated by 217 nucleotides
Rru_A3241: Rru_A3241 - chemotaxis sensory transducer (NCBI), at 3,736,556 to 3,737,893
_A3241
Rru_A3242: Rru_A3242 - Transcriptional Regulator, XRE family (NCBI), at 3,737,937 to 3,738,386
_A3242
Rru_A3243: Rru_A3243 - H+-transporting two-sector ATPase, B/B' subunit (NCBI), at 3,738,796 to 3,739,344
_A3243
Rru_A3244: Rru_A3244 - H+-transporting two-sector ATPase, B/B' subunit (NCBI), at 3,739,350 to 3,739,835
_A3244
Rru_A3245: Rru_A3245 - H+-transporting two-sector ATPase, C subunit (NCBI), at 3,740,053 to 3,740,280
_A3245
Position (kb)
3738
3739
3740 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3737.938 kb on + strand at 3737.938 kb on + strand at 3737.939 kb on - strand at 3737.939 kb on - strand at 3737.939 kb on - strand at 3737.939 kb on - strand at 3738.187 kb on + strand, within Rru_A3242 at 3738.187 kb on + strand, within Rru_A3242 at 3738.187 kb on + strand, within Rru_A3242 at 3738.188 kb on - strand, within Rru_A3242 at 3738.188 kb on - strand, within Rru_A3242 at 3738.188 kb on - strand, within Rru_A3242 at 3738.226 kb on + strand, within Rru_A3242 at 3738.226 kb on + strand, within Rru_A3242 at 3738.227 kb on - strand, within Rru_A3242 at 3738.227 kb on - strand, within Rru_A3242 at 3738.227 kb on - strand, within Rru_A3242 at 3738.227 kb on - strand, within Rru_A3242 at 3738.399 kb on - strand at 3738.571 kb on + strand at 3738.687 kb on + strand at 3738.734 kb on + strand at 3739.858 kb on - strand at 3739.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,737,938 + +8.7 3,737,938 + -1.5 3,737,939 - -2.1 3,737,939 - -0.8 3,737,939 - -0.4 3,737,939 - -2.0 3,738,187 + Rru_A3242 0.56 -0.6 3,738,187 + Rru_A3242 0.56 -2.7 3,738,187 + Rru_A3242 0.56 +0.3 3,738,188 - Rru_A3242 0.56 -0.4 3,738,188 - Rru_A3242 0.56 -0.1 3,738,188 - Rru_A3242 0.56 -1.0 3,738,226 + Rru_A3242 0.64 +0.5 3,738,226 + Rru_A3242 0.64 -3.9 3,738,227 - Rru_A3242 0.64 +3.7 3,738,227 - Rru_A3242 0.64 +0.1 3,738,227 - Rru_A3242 0.64 -1.5 3,738,227 - Rru_A3242 0.64 +2.0 3,738,399 - -2.0 3,738,571 + +1.4 3,738,687 + +0.8 3,738,734 + -2.5 3,739,858 - -2.2 3,739,858 - -0.6
Or see this region's nucleotide sequence