Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3243

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3241 and Rru_A3242 are separated by 43 nucleotidesRru_A3242 and Rru_A3243 are separated by 409 nucleotidesRru_A3243 and Rru_A3244 are separated by 5 nucleotidesRru_A3244 and Rru_A3245 are separated by 217 nucleotides Rru_A3241: Rru_A3241 - chemotaxis sensory transducer (NCBI), at 3,736,556 to 3,737,893 _A3241 Rru_A3242: Rru_A3242 - Transcriptional Regulator, XRE family (NCBI), at 3,737,937 to 3,738,386 _A3242 Rru_A3243: Rru_A3243 - H+-transporting two-sector ATPase, B/B' subunit (NCBI), at 3,738,796 to 3,739,344 _A3243 Rru_A3244: Rru_A3244 - H+-transporting two-sector ATPase, B/B' subunit (NCBI), at 3,739,350 to 3,739,835 _A3244 Rru_A3245: Rru_A3245 - H+-transporting two-sector ATPase, C subunit (NCBI), at 3,740,053 to 3,740,280 _A3245 Position (kb) 3738 3739 3740Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 3737.938 kb on + strandat 3737.938 kb on + strandat 3737.939 kb on - strandat 3737.939 kb on - strandat 3737.939 kb on - strandat 3737.939 kb on - strandat 3738.187 kb on + strand, within Rru_A3242at 3738.187 kb on + strand, within Rru_A3242at 3738.187 kb on + strand, within Rru_A3242at 3738.188 kb on - strand, within Rru_A3242at 3738.188 kb on - strand, within Rru_A3242at 3738.188 kb on - strand, within Rru_A3242at 3738.226 kb on + strand, within Rru_A3242at 3738.226 kb on + strand, within Rru_A3242at 3738.227 kb on - strand, within Rru_A3242at 3738.227 kb on - strand, within Rru_A3242at 3738.227 kb on - strand, within Rru_A3242at 3738.227 kb on - strand, within Rru_A3242at 3738.399 kb on - strandat 3738.571 kb on + strandat 3738.687 kb on + strandat 3738.734 kb on + strandat 3739.858 kb on - strandat 3739.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,737,938 + +8.7
3,737,938 + -1.5
3,737,939 - -2.1
3,737,939 - -0.8
3,737,939 - -0.4
3,737,939 - -2.0
3,738,187 + Rru_A3242 0.56 -0.6
3,738,187 + Rru_A3242 0.56 -2.7
3,738,187 + Rru_A3242 0.56 +0.3
3,738,188 - Rru_A3242 0.56 -0.4
3,738,188 - Rru_A3242 0.56 -0.1
3,738,188 - Rru_A3242 0.56 -1.0
3,738,226 + Rru_A3242 0.64 +0.5
3,738,226 + Rru_A3242 0.64 -3.9
3,738,227 - Rru_A3242 0.64 +3.7
3,738,227 - Rru_A3242 0.64 +0.1
3,738,227 - Rru_A3242 0.64 -1.5
3,738,227 - Rru_A3242 0.64 +2.0
3,738,399 - -2.0
3,738,571 + +1.4
3,738,687 + +0.8
3,738,734 + -2.5
3,739,858 - -2.2
3,739,858 - -0.6

Or see this region's nucleotide sequence