Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3176

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3175 and Rru_A3176 overlap by 1 nucleotidesRru_A3176 and Rru_A3177 are separated by 8 nucleotidesRru_A3177 and Rru_A3178 are separated by 168 nucleotidesRru_A3178 and Rru_A3179 overlap by 4 nucleotides Rru_A3175: Rru_A3175 - Glutamyl-tRNA(Gln) amidotransferase B subunit (NCBI), at 3,666,819 to 3,668,276 _A3175 Rru_A3176: Rru_A3176 - Glutamyl-tRNA(Gln) amidotransferase A subunit (NCBI), at 3,668,276 to 3,669,778 _A3176 Rru_A3177: Rru_A3177 - Glutamyl-tRNA(Gln) amidotransferase C subunit (NCBI), at 3,669,787 to 3,670,074 _A3177 Rru_A3178: Rru_A3178 - Holliday junction resolvase YqgF (NCBI), at 3,670,243 to 3,670,728 _A3178 Rru_A3179: Rru_A3179 - GCN5-related N-acetyltransferase (NCBI), at 3,670,725 to 3,671,351 _A3179 Position (kb) 3668 3669 3670Strain fitness (log2 ratio) -2 -1 0 1at 3668.270 kb on - strandat 3670.110 kb on - strandat 3670.727 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
3,668,270 - -1.5
3,670,110 - -2.4
3,670,727 - -1.9

Or see this region's nucleotide sequence