Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3175

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3174 and Rru_A3175 overlap by 35 nucleotidesRru_A3175 and Rru_A3176 overlap by 1 nucleotides Rru_A3174: Rru_A3174 - Major facilitator superfamily MFS_1 (NCBI), at 3,665,615 to 3,666,853 _A3174 Rru_A3175: Rru_A3175 - Glutamyl-tRNA(Gln) amidotransferase B subunit (NCBI), at 3,666,819 to 3,668,276 _A3175 Rru_A3176: Rru_A3176 - Glutamyl-tRNA(Gln) amidotransferase A subunit (NCBI), at 3,668,276 to 3,669,778 _A3176 Position (kb) 3666 3667 3668 3669Strain fitness (log2 ratio) -3 -2 -1 0 1at 3666.019 kb on + strand, within Rru_A3174at 3666.020 kb on - strand, within Rru_A3174at 3666.293 kb on + strand, within Rru_A3174at 3666.293 kb on + strand, within Rru_A3174at 3666.293 kb on + strand, within Rru_A3174at 3666.294 kb on - strand, within Rru_A3174at 3666.294 kb on - strand, within Rru_A3174at 3666.294 kb on - strand, within Rru_A3174at 3666.294 kb on - strand, within Rru_A3174at 3666.375 kb on + strand, within Rru_A3174at 3666.629 kb on + strand, within Rru_A3174at 3666.629 kb on + strand, within Rru_A3174at 3666.629 kb on + strand, within Rru_A3174at 3666.629 kb on + strand, within Rru_A3174at 3666.629 kb on + strand, within Rru_A3174at 3666.629 kb on + strand, within Rru_A3174at 3666.630 kb on - strand, within Rru_A3174at 3666.630 kb on - strand, within Rru_A3174at 3666.630 kb on - strand, within Rru_A3174at 3666.630 kb on - strand, within Rru_A3174at 3666.630 kb on - strand, within Rru_A3174at 3666.641 kb on + strand, within Rru_A3174at 3666.641 kb on + strand, within Rru_A3174at 3666.642 kb on - strand, within Rru_A3174at 3666.642 kb on - strand, within Rru_A3174at 3666.642 kb on - strand, within Rru_A3174at 3666.719 kb on + strand, within Rru_A3174at 3666.719 kb on + strand, within Rru_A3174at 3666.719 kb on + strand, within Rru_A3174at 3666.720 kb on - strand, within Rru_A3174at 3666.720 kb on - strand, within Rru_A3174at 3666.747 kb on + strandat 3668.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,666,019 + Rru_A3174 0.33 +0.6
3,666,020 - Rru_A3174 0.33 -1.6
3,666,293 + Rru_A3174 0.55 -0.9
3,666,293 + Rru_A3174 0.55 -2.0
3,666,293 + Rru_A3174 0.55 -1.8
3,666,294 - Rru_A3174 0.55 +0.7
3,666,294 - Rru_A3174 0.55 -0.2
3,666,294 - Rru_A3174 0.55 +0.9
3,666,294 - Rru_A3174 0.55 +1.7
3,666,375 + Rru_A3174 0.61 +0.1
3,666,629 + Rru_A3174 0.82 -3.0
3,666,629 + Rru_A3174 0.82 +1.2
3,666,629 + Rru_A3174 0.82 +1.3
3,666,629 + Rru_A3174 0.82 -1.2
3,666,629 + Rru_A3174 0.82 -1.1
3,666,629 + Rru_A3174 0.82 -1.7
3,666,630 - Rru_A3174 0.82 +0.3
3,666,630 - Rru_A3174 0.82 -1.7
3,666,630 - Rru_A3174 0.82 -1.1
3,666,630 - Rru_A3174 0.82 -1.1
3,666,630 - Rru_A3174 0.82 -0.6
3,666,641 + Rru_A3174 0.83 +0.3
3,666,641 + Rru_A3174 0.83 -0.7
3,666,642 - Rru_A3174 0.83 +0.9
3,666,642 - Rru_A3174 0.83 -3.5
3,666,642 - Rru_A3174 0.83 -1.0
3,666,719 + Rru_A3174 0.89 -1.0
3,666,719 + Rru_A3174 0.89 -0.1
3,666,719 + Rru_A3174 0.89 -0.7
3,666,720 - Rru_A3174 0.89 +0.8
3,666,720 - Rru_A3174 0.89 -0.5
3,666,747 + +0.0
3,668,270 - -1.5

Or see this region's nucleotide sequence