Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3174 and Rru_A3175 overlap by 35 nucleotides Rru_A3175 and Rru_A3176 overlap by 1 nucleotides
Rru_A3174: Rru_A3174 - Major facilitator superfamily MFS_1 (NCBI), at 3,665,615 to 3,666,853
_A3174
Rru_A3175: Rru_A3175 - Glutamyl-tRNA(Gln) amidotransferase B subunit (NCBI), at 3,666,819 to 3,668,276
_A3175
Rru_A3176: Rru_A3176 - Glutamyl-tRNA(Gln) amidotransferase A subunit (NCBI), at 3,668,276 to 3,669,778
_A3176
Position (kb)
3666
3667
3668
3669 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3666.019 kb on + strand, within Rru_A3174 at 3666.020 kb on - strand, within Rru_A3174 at 3666.293 kb on + strand, within Rru_A3174 at 3666.293 kb on + strand, within Rru_A3174 at 3666.293 kb on + strand, within Rru_A3174 at 3666.294 kb on - strand, within Rru_A3174 at 3666.294 kb on - strand, within Rru_A3174 at 3666.294 kb on - strand, within Rru_A3174 at 3666.294 kb on - strand, within Rru_A3174 at 3666.375 kb on + strand, within Rru_A3174 at 3666.629 kb on + strand, within Rru_A3174 at 3666.629 kb on + strand, within Rru_A3174 at 3666.629 kb on + strand, within Rru_A3174 at 3666.629 kb on + strand, within Rru_A3174 at 3666.629 kb on + strand, within Rru_A3174 at 3666.629 kb on + strand, within Rru_A3174 at 3666.630 kb on - strand, within Rru_A3174 at 3666.630 kb on - strand, within Rru_A3174 at 3666.630 kb on - strand, within Rru_A3174 at 3666.630 kb on - strand, within Rru_A3174 at 3666.630 kb on - strand, within Rru_A3174 at 3666.641 kb on + strand, within Rru_A3174 at 3666.641 kb on + strand, within Rru_A3174 at 3666.642 kb on - strand, within Rru_A3174 at 3666.642 kb on - strand, within Rru_A3174 at 3666.642 kb on - strand, within Rru_A3174 at 3666.719 kb on + strand, within Rru_A3174 at 3666.719 kb on + strand, within Rru_A3174 at 3666.719 kb on + strand, within Rru_A3174 at 3666.720 kb on - strand, within Rru_A3174 at 3666.720 kb on - strand, within Rru_A3174 at 3666.747 kb on + strand at 3668.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,666,019 + Rru_A3174 0.33 +0.6 3,666,020 - Rru_A3174 0.33 -1.6 3,666,293 + Rru_A3174 0.55 -0.9 3,666,293 + Rru_A3174 0.55 -2.0 3,666,293 + Rru_A3174 0.55 -1.8 3,666,294 - Rru_A3174 0.55 +0.7 3,666,294 - Rru_A3174 0.55 -0.2 3,666,294 - Rru_A3174 0.55 +0.9 3,666,294 - Rru_A3174 0.55 +1.7 3,666,375 + Rru_A3174 0.61 +0.1 3,666,629 + Rru_A3174 0.82 -3.0 3,666,629 + Rru_A3174 0.82 +1.2 3,666,629 + Rru_A3174 0.82 +1.3 3,666,629 + Rru_A3174 0.82 -1.2 3,666,629 + Rru_A3174 0.82 -1.1 3,666,629 + Rru_A3174 0.82 -1.7 3,666,630 - Rru_A3174 0.82 +0.3 3,666,630 - Rru_A3174 0.82 -1.7 3,666,630 - Rru_A3174 0.82 -1.1 3,666,630 - Rru_A3174 0.82 -1.1 3,666,630 - Rru_A3174 0.82 -0.6 3,666,641 + Rru_A3174 0.83 +0.3 3,666,641 + Rru_A3174 0.83 -0.7 3,666,642 - Rru_A3174 0.83 +0.9 3,666,642 - Rru_A3174 0.83 -3.5 3,666,642 - Rru_A3174 0.83 -1.0 3,666,719 + Rru_A3174 0.89 -1.0 3,666,719 + Rru_A3174 0.89 -0.1 3,666,719 + Rru_A3174 0.89 -0.7 3,666,720 - Rru_A3174 0.89 +0.8 3,666,720 - Rru_A3174 0.89 -0.5 3,666,747 + +0.0 3,668,270 - -1.5
Or see this region's nucleotide sequence