Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3122

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3121 and Rru_A3122 overlap by 4 nucleotidesRru_A3122 and Rru_A3123 are separated by 2 nucleotidesRru_A3123 and Rru_A3124 overlap by 4 nucleotides Rru_A3121: Rru_A3121 - Asparagine synthase, glutamine-hydrolyzing (NCBI), at 3,600,181 to 3,602,106 _A3121 Rru_A3122: Rru_A3122 - hypothetical protein (NCBI), at 3,602,103 to 3,602,387 _A3122 Rru_A3123: Rru_A3123 - esterase/lipase/thioesterase family active site (NCBI), at 3,602,390 to 3,603,160 _A3123 Rru_A3124: Rru_A3124 - Alpha/beta hydrolase fold (NCBI), at 3,603,157 to 3,603,999 _A3124 Position (kb) 3602 3603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3601.114 kb on + strand, within Rru_A3121at 3601.114 kb on + strand, within Rru_A3121at 3601.138 kb on - strand, within Rru_A3121at 3601.324 kb on - strand, within Rru_A3121at 3601.481 kb on - strand, within Rru_A3121at 3601.481 kb on - strand, within Rru_A3121at 3601.528 kb on + strand, within Rru_A3121at 3601.528 kb on + strand, within Rru_A3121at 3601.529 kb on - strand, within Rru_A3121at 3601.529 kb on - strand, within Rru_A3121at 3601.529 kb on - strand, within Rru_A3121at 3601.590 kb on + strand, within Rru_A3121at 3601.590 kb on + strand, within Rru_A3121at 3601.591 kb on - strand, within Rru_A3121at 3601.591 kb on - strand, within Rru_A3121at 3601.591 kb on - strand, within Rru_A3121at 3601.633 kb on + strand, within Rru_A3121at 3601.633 kb on + strand, within Rru_A3121at 3601.633 kb on + strand, within Rru_A3121at 3601.634 kb on - strand, within Rru_A3121at 3601.634 kb on - strand, within Rru_A3121at 3601.634 kb on - strand, within Rru_A3121at 3601.798 kb on + strand, within Rru_A3121at 3601.798 kb on + strand, within Rru_A3121at 3601.799 kb on - strand, within Rru_A3121at 3601.799 kb on - strand, within Rru_A3121at 3601.799 kb on - strand, within Rru_A3121at 3601.799 kb on - strand, within Rru_A3121at 3601.799 kb on - strand, within Rru_A3121at 3602.029 kb on + strandat 3602.029 kb on + strandat 3602.480 kb on + strand, within Rru_A3123at 3602.480 kb on + strand, within Rru_A3123at 3602.481 kb on - strand, within Rru_A3123at 3602.533 kb on - strand, within Rru_A3123at 3602.828 kb on - strand, within Rru_A3123at 3602.828 kb on - strand, within Rru_A3123at 3602.828 kb on - strand, within Rru_A3123at 3603.153 kb on + strandat 3603.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,601,114 + Rru_A3121 0.48 +1.0
3,601,114 + Rru_A3121 0.48 -0.0
3,601,138 - Rru_A3121 0.50 -0.2
3,601,324 - Rru_A3121 0.59 +0.9
3,601,481 - Rru_A3121 0.67 +1.1
3,601,481 - Rru_A3121 0.67 -0.0
3,601,528 + Rru_A3121 0.70 -1.6
3,601,528 + Rru_A3121 0.70 +0.6
3,601,529 - Rru_A3121 0.70 +1.6
3,601,529 - Rru_A3121 0.70 -1.7
3,601,529 - Rru_A3121 0.70 -1.0
3,601,590 + Rru_A3121 0.73 -1.0
3,601,590 + Rru_A3121 0.73 -2.4
3,601,591 - Rru_A3121 0.73 +1.6
3,601,591 - Rru_A3121 0.73 +2.0
3,601,591 - Rru_A3121 0.73 -0.5
3,601,633 + Rru_A3121 0.75 -0.0
3,601,633 + Rru_A3121 0.75 -1.0
3,601,633 + Rru_A3121 0.75 -3.9
3,601,634 - Rru_A3121 0.75 +1.6
3,601,634 - Rru_A3121 0.75 +1.5
3,601,634 - Rru_A3121 0.75 -0.8
3,601,798 + Rru_A3121 0.84 +0.9
3,601,798 + Rru_A3121 0.84 -0.1
3,601,799 - Rru_A3121 0.84 +0.5
3,601,799 - Rru_A3121 0.84 -1.0
3,601,799 - Rru_A3121 0.84 -1.3
3,601,799 - Rru_A3121 0.84 +3.6
3,601,799 - Rru_A3121 0.84 -1.0
3,602,029 + -3.6
3,602,029 + -0.6
3,602,480 + Rru_A3123 0.12 -2.3
3,602,480 + Rru_A3123 0.12 -1.9
3,602,481 - Rru_A3123 0.12 +2.1
3,602,533 - Rru_A3123 0.19 -1.8
3,602,828 - Rru_A3123 0.57 -0.2
3,602,828 - Rru_A3123 0.57 -0.3
3,602,828 - Rru_A3123 0.57 -0.3
3,603,153 + -0.1
3,603,153 + +0.3

Or see this region's nucleotide sequence