Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3084 and Rru_A3085 are separated by 94 nucleotides Rru_A3085 and Rru_A3086 overlap by 11 nucleotides Rru_A3086 and Rru_A3087 are separated by 240 nucleotides
Rru_A3084: Rru_A3084 - Small GTP-binding protein domain (NCBI), at 3,548,482 to 3,549,984
_A3084
Rru_A3085: Rru_A3085 - Pyrrolo-quinoline quinone (NCBI), at 3,550,079 to 3,551,446
_A3085
Rru_A3086: Rru_A3086 - hypothetical protein (NCBI), at 3,551,436 to 3,552,197
_A3086
Rru_A3087: Rru_A3087 - hypothetical protein (NCBI), at 3,552,438 to 3,552,899
_A3087
Position (kb)
3550
3551
3552 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3549.985 kb on - strand at 3549.985 kb on - strand at 3549.994 kb on - strand at 3550.060 kb on + strand at 3550.061 kb on - strand at 3552.259 kb on - strand at 3552.311 kb on - strand at 3552.313 kb on + strand at 3552.313 kb on + strand at 3552.314 kb on - strand at 3552.314 kb on - strand at 3552.349 kb on + strand at 3552.349 kb on + strand at 3552.355 kb on + strand at 3552.355 kb on + strand at 3552.355 kb on + strand at 3552.355 kb on + strand at 3552.355 kb on + strand at 3552.355 kb on + strand at 3552.355 kb on + strand at 3552.355 kb on + strand at 3552.356 kb on - strand at 3552.356 kb on - strand at 3552.356 kb on - strand at 3552.356 kb on - strand at 3552.356 kb on - strand at 3552.427 kb on + strand at 3552.428 kb on - strand at 3552.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,549,985 - -0.8 3,549,985 - +1.0 3,549,994 - +0.8 3,550,060 + -1.2 3,550,061 - +2.0 3,552,259 - +0.4 3,552,311 - -1.8 3,552,313 + -0.3 3,552,313 + +0.3 3,552,314 - -0.8 3,552,314 - -0.0 3,552,349 + -0.3 3,552,349 + -0.7 3,552,355 + -2.0 3,552,355 + -1.3 3,552,355 + -1.1 3,552,355 + +1.9 3,552,355 + +1.0 3,552,355 + +0.2 3,552,355 + -1.2 3,552,355 + +0.6 3,552,356 - +0.8 3,552,356 - -0.2 3,552,356 - +0.5 3,552,356 - +1.1 3,552,356 - -1.3 3,552,427 + +3.1 3,552,428 - +0.5 3,552,428 - +1.0
Or see this region's nucleotide sequence