Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3085

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3084 and Rru_A3085 are separated by 94 nucleotidesRru_A3085 and Rru_A3086 overlap by 11 nucleotidesRru_A3086 and Rru_A3087 are separated by 240 nucleotides Rru_A3084: Rru_A3084 - Small GTP-binding protein domain (NCBI), at 3,548,482 to 3,549,984 _A3084 Rru_A3085: Rru_A3085 - Pyrrolo-quinoline quinone (NCBI), at 3,550,079 to 3,551,446 _A3085 Rru_A3086: Rru_A3086 - hypothetical protein (NCBI), at 3,551,436 to 3,552,197 _A3086 Rru_A3087: Rru_A3087 - hypothetical protein (NCBI), at 3,552,438 to 3,552,899 _A3087 Position (kb) 3550 3551 3552Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3549.985 kb on - strandat 3549.985 kb on - strandat 3549.994 kb on - strandat 3550.060 kb on + strandat 3550.061 kb on - strandat 3552.259 kb on - strandat 3552.311 kb on - strandat 3552.313 kb on + strandat 3552.313 kb on + strandat 3552.314 kb on - strandat 3552.314 kb on - strandat 3552.349 kb on + strandat 3552.349 kb on + strandat 3552.355 kb on + strandat 3552.355 kb on + strandat 3552.355 kb on + strandat 3552.355 kb on + strandat 3552.355 kb on + strandat 3552.355 kb on + strandat 3552.355 kb on + strandat 3552.355 kb on + strandat 3552.356 kb on - strandat 3552.356 kb on - strandat 3552.356 kb on - strandat 3552.356 kb on - strandat 3552.356 kb on - strandat 3552.427 kb on + strandat 3552.428 kb on - strandat 3552.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,549,985 - -0.8
3,549,985 - +1.0
3,549,994 - +0.8
3,550,060 + -1.2
3,550,061 - +2.0
3,552,259 - +0.4
3,552,311 - -1.8
3,552,313 + -0.3
3,552,313 + +0.3
3,552,314 - -0.8
3,552,314 - -0.0
3,552,349 + -0.3
3,552,349 + -0.7
3,552,355 + -2.0
3,552,355 + -1.3
3,552,355 + -1.1
3,552,355 + +1.9
3,552,355 + +1.0
3,552,355 + +0.2
3,552,355 + -1.2
3,552,355 + +0.6
3,552,356 - +0.8
3,552,356 - -0.2
3,552,356 - +0.5
3,552,356 - +1.1
3,552,356 - -1.3
3,552,427 + +3.1
3,552,428 - +0.5
3,552,428 - +1.0

Or see this region's nucleotide sequence