Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3073

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3072 and Rru_A3073 overlap by 41 nucleotidesRru_A3073 and Rru_A3074 overlap by 4 nucleotides Rru_A3072: Rru_A3072 - MscS Mechanosensitive ion channel (NCBI), at 3,536,238 to 3,538,559 _A3072 Rru_A3073: Rru_A3073 - Phosphoesterase, PA-phosphatase related (NCBI), at 3,538,519 to 3,539,238 _A3073 Rru_A3074: Rru_A3074 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like (NCBI), at 3,539,235 to 3,540,776 _A3074 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3537.714 kb on + strand, within Rru_A3072at 3537.714 kb on + strand, within Rru_A3072at 3537.771 kb on - strand, within Rru_A3072at 3538.004 kb on + strand, within Rru_A3072at 3538.071 kb on - strand, within Rru_A3072at 3538.129 kb on - strand, within Rru_A3072at 3538.129 kb on - strand, within Rru_A3072at 3538.148 kb on - strand, within Rru_A3072at 3538.224 kb on + strand, within Rru_A3072at 3538.406 kb on + strandat 3538.406 kb on + strandat 3539.349 kb on - strandat 3539.378 kb on + strandat 3539.379 kb on - strandat 3539.700 kb on - strand, within Rru_A3074at 3539.786 kb on - strand, within Rru_A3074at 3539.786 kb on - strand, within Rru_A3074

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,537,714 + Rru_A3072 0.64 +1.0
3,537,714 + Rru_A3072 0.64 -0.0
3,537,771 - Rru_A3072 0.66 +2.1
3,538,004 + Rru_A3072 0.76 -1.5
3,538,071 - Rru_A3072 0.79 +1.2
3,538,129 - Rru_A3072 0.81 -2.1
3,538,129 - Rru_A3072 0.81 +2.0
3,538,148 - Rru_A3072 0.82 -0.4
3,538,224 + Rru_A3072 0.86 +1.4
3,538,406 + +3.0
3,538,406 + -0.2
3,539,349 - -2.0
3,539,378 + -1.0
3,539,379 - +1.0
3,539,700 - Rru_A3074 0.30 +0.2
3,539,786 - Rru_A3074 0.36 -1.1
3,539,786 - Rru_A3074 0.36 -0.9

Or see this region's nucleotide sequence