Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2966 and Rru_A2967 are separated by 4 nucleotides Rru_A2967 and Rru_A2968 are separated by 64 nucleotides Rru_A2968 and Rru_A2969 are separated by 33 nucleotides
Rru_A2966: Rru_A2966 - Isoleucyl-tRNA synthetase, class Ia (NCBI), at 3,415,796 to 3,418,618
_A2966
Rru_A2967: Rru_A2967 - Peptidase A8, signal peptidase II (NCBI), at 3,418,623 to 3,419,105
_A2967
Rru_A2968: Rru_A2968 - hypothetical protein (NCBI), at 3,419,170 to 3,419,727
_A2968
Rru_A2969: Rru_A2969 - alanyl-tRNA synthetase related protein (NCBI), at 3,419,761 to 3,420,405
_A2969
Position (kb)
3418
3419
3420 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3419.769 kb on + strand at 3419.769 kb on + strand at 3419.770 kb on - strand at 3419.863 kb on + strand, within Rru_A2969 at 3419.863 kb on + strand, within Rru_A2969 at 3419.863 kb on + strand, within Rru_A2969 at 3419.864 kb on - strand, within Rru_A2969 at 3419.864 kb on - strand, within Rru_A2969 at 3419.864 kb on - strand, within Rru_A2969 at 3419.953 kb on + strand, within Rru_A2969 at 3419.953 kb on + strand, within Rru_A2969 at 3419.953 kb on + strand, within Rru_A2969 at 3419.953 kb on + strand, within Rru_A2969 at 3419.953 kb on + strand, within Rru_A2969 at 3419.978 kb on + strand, within Rru_A2969 at 3419.979 kb on - strand, within Rru_A2969
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,419,769 + -0.3 3,419,769 + +1.1 3,419,770 - -0.3 3,419,863 + Rru_A2969 0.16 -2.7 3,419,863 + Rru_A2969 0.16 +1.6 3,419,863 + Rru_A2969 0.16 -1.8 3,419,864 - Rru_A2969 0.16 -1.4 3,419,864 - Rru_A2969 0.16 +1.0 3,419,864 - Rru_A2969 0.16 -1.9 3,419,953 + Rru_A2969 0.30 -1.0 3,419,953 + Rru_A2969 0.30 -3.5 3,419,953 + Rru_A2969 0.30 -0.5 3,419,953 + Rru_A2969 0.30 -2.6 3,419,953 + Rru_A2969 0.30 +1.6 3,419,978 + Rru_A2969 0.34 -1.8 3,419,979 - Rru_A2969 0.34 -2.1
Or see this region's nucleotide sequence