Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2967

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2966 and Rru_A2967 are separated by 4 nucleotidesRru_A2967 and Rru_A2968 are separated by 64 nucleotidesRru_A2968 and Rru_A2969 are separated by 33 nucleotides Rru_A2966: Rru_A2966 - Isoleucyl-tRNA synthetase, class Ia (NCBI), at 3,415,796 to 3,418,618 _A2966 Rru_A2967: Rru_A2967 - Peptidase A8, signal peptidase II (NCBI), at 3,418,623 to 3,419,105 _A2967 Rru_A2968: Rru_A2968 - hypothetical protein (NCBI), at 3,419,170 to 3,419,727 _A2968 Rru_A2969: Rru_A2969 - alanyl-tRNA synthetase related protein (NCBI), at 3,419,761 to 3,420,405 _A2969 Position (kb) 3418 3419 3420Strain fitness (log2 ratio) -3 -2 -1 0 1at 3419.769 kb on + strandat 3419.769 kb on + strandat 3419.770 kb on - strandat 3419.863 kb on + strand, within Rru_A2969at 3419.863 kb on + strand, within Rru_A2969at 3419.863 kb on + strand, within Rru_A2969at 3419.864 kb on - strand, within Rru_A2969at 3419.864 kb on - strand, within Rru_A2969at 3419.864 kb on - strand, within Rru_A2969at 3419.953 kb on + strand, within Rru_A2969at 3419.953 kb on + strand, within Rru_A2969at 3419.953 kb on + strand, within Rru_A2969at 3419.953 kb on + strand, within Rru_A2969at 3419.953 kb on + strand, within Rru_A2969at 3419.978 kb on + strand, within Rru_A2969at 3419.979 kb on - strand, within Rru_A2969

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,419,769 + -0.3
3,419,769 + +1.1
3,419,770 - -0.3
3,419,863 + Rru_A2969 0.16 -2.7
3,419,863 + Rru_A2969 0.16 +1.6
3,419,863 + Rru_A2969 0.16 -1.8
3,419,864 - Rru_A2969 0.16 -1.4
3,419,864 - Rru_A2969 0.16 +1.0
3,419,864 - Rru_A2969 0.16 -1.9
3,419,953 + Rru_A2969 0.30 -1.0
3,419,953 + Rru_A2969 0.30 -3.5
3,419,953 + Rru_A2969 0.30 -0.5
3,419,953 + Rru_A2969 0.30 -2.6
3,419,953 + Rru_A2969 0.30 +1.6
3,419,978 + Rru_A2969 0.34 -1.8
3,419,979 - Rru_A2969 0.34 -2.1

Or see this region's nucleotide sequence