Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2966

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2965 and Rru_A2966 are separated by 165 nucleotidesRru_A2966 and Rru_A2967 are separated by 4 nucleotidesRru_A2967 and Rru_A2968 are separated by 64 nucleotides Rru_A2965: Rru_A2965 - Riboflavin kinase / FAD synthetase (NCBI), at 3,414,677 to 3,415,630 _A2965 Rru_A2966: Rru_A2966 - Isoleucyl-tRNA synthetase, class Ia (NCBI), at 3,415,796 to 3,418,618 _A2966 Rru_A2967: Rru_A2967 - Peptidase A8, signal peptidase II (NCBI), at 3,418,623 to 3,419,105 _A2967 Rru_A2968: Rru_A2968 - hypothetical protein (NCBI), at 3,419,170 to 3,419,727 _A2968 Position (kb) 3415 3416 3417 3418 3419Strain fitness (log2 ratio) -2 -1 0 1at 3415.628 kb on + strandat 3415.629 kb on - strandat 3415.633 kb on - strandat 3415.633 kb on - strandat 3415.644 kb on + strandat 3415.644 kb on + strandat 3415.644 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,415,628 + +1.5
3,415,629 - -0.3
3,415,633 - +1.0
3,415,633 - -1.3
3,415,644 + +1.0
3,415,644 + -0.4
3,415,644 + -2.4

Or see this region's nucleotide sequence