Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2943

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2942 and Rru_A2943 overlap by 1 nucleotidesRru_A2943 and Rru_A2944 are separated by 87 nucleotides Rru_A2942: Rru_A2942 - ABC transporter, transmembrane region (NCBI), at 3,390,263 to 3,392,080 _A2942 Rru_A2943: Rru_A2943 - permease YjgP/YjgQ (NCBI), at 3,392,080 to 3,393,270 _A2943 Rru_A2944: Rru_A2944 - ArgK protein (NCBI), at 3,393,358 to 3,394,317 _A2944 Position (kb) 3392 3393 3394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3393.515 kb on - strand, within Rru_A2944at 3393.537 kb on - strand, within Rru_A2944at 3393.537 kb on - strand, within Rru_A2944at 3393.693 kb on + strand, within Rru_A2944at 3393.693 kb on + strand, within Rru_A2944at 3393.694 kb on - strand, within Rru_A2944at 3393.749 kb on + strand, within Rru_A2944at 3393.750 kb on - strand, within Rru_A2944at 3393.795 kb on + strand, within Rru_A2944

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,393,515 - Rru_A2944 0.16 +4.3
3,393,537 - Rru_A2944 0.19 +1.0
3,393,537 - Rru_A2944 0.19 -1.2
3,393,693 + Rru_A2944 0.35 -0.6
3,393,693 + Rru_A2944 0.35 -0.5
3,393,694 - Rru_A2944 0.35 +0.0
3,393,749 + Rru_A2944 0.41 -0.6
3,393,750 - Rru_A2944 0.41 -3.7
3,393,795 + Rru_A2944 0.46 -0.8

Or see this region's nucleotide sequence