Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2942

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2940 and Rru_A2941 are separated by 176 nucleotidesRru_A2941 and Rru_A2942 are separated by 140 nucleotidesRru_A2942 and Rru_A2943 overlap by 1 nucleotides Rru_A2940: Rru_A2940 - Glycine cleavage T protein (aminomethyl transferase) (NCBI), at 3,388,714 to 3,389,652 _A2940 Rru_A2941: Rru_A2941 - putative DNA-binding protein (NCBI), at 3,389,829 to 3,390,122 _A2941 Rru_A2942: Rru_A2942 - ABC transporter, transmembrane region (NCBI), at 3,390,263 to 3,392,080 _A2942 Rru_A2943: Rru_A2943 - permease YjgP/YjgQ (NCBI), at 3,392,080 to 3,393,270 _A2943 Position (kb) 3390 3391 3392 3393Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3389.733 kb on + strandat 3389.799 kb on - strandat 3389.845 kb on + strandat 3389.845 kb on + strandat 3389.845 kb on + strandat 3389.845 kb on + strandat 3389.871 kb on + strand, within Rru_A2941at 3389.871 kb on + strand, within Rru_A2941at 3389.871 kb on + strand, within Rru_A2941at 3389.871 kb on + strand, within Rru_A2941at 3389.871 kb on + strand, within Rru_A2941at 3389.872 kb on - strand, within Rru_A2941at 3390.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,389,733 + +1.5
3,389,799 - -1.6
3,389,845 + +1.1
3,389,845 + -1.7
3,389,845 + +0.4
3,389,845 + -2.3
3,389,871 + Rru_A2941 0.14 -2.6
3,389,871 + Rru_A2941 0.14 -1.2
3,389,871 + Rru_A2941 0.14 +0.2
3,389,871 + Rru_A2941 0.14 +0.0
3,389,871 + Rru_A2941 0.14 +0.2
3,389,872 - Rru_A2941 0.15 +3.6
3,390,201 - -2.3

Or see this region's nucleotide sequence