Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2938

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2937 and Rru_A2938 are separated by 21 nucleotidesRru_A2938 and Rru_A2939 are separated by 72 nucleotides Rru_A2937: Rru_A2937 - Asparagine synthase, glutamine-hydrolyzing (NCBI), at 3,384,570 to 3,386,330 _A2937 Rru_A2938: Rru_A2938 - Glycosyl transferase, group 1 (NCBI), at 3,386,352 to 3,387,407 _A2938 Rru_A2939: Rru_A2939 - hypothetical protein (NCBI), at 3,387,480 to 3,388,535 _A2939 Position (kb) 3386 3387 3388Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 3385.975 kb on + strand, within Rru_A2937at 3386.020 kb on + strand, within Rru_A2937at 3386.100 kb on - strand, within Rru_A2937at 3387.490 kb on - strandat 3387.490 kb on - strandat 3387.494 kb on + strandat 3387.494 kb on + strandat 3387.588 kb on + strand, within Rru_A2939at 3387.588 kb on + strand, within Rru_A2939at 3387.588 kb on + strand, within Rru_A2939at 3387.588 kb on + strand, within Rru_A2939at 3387.589 kb on - strand, within Rru_A2939at 3387.589 kb on - strand, within Rru_A2939at 3387.589 kb on - strand, within Rru_A2939at 3387.638 kb on - strand, within Rru_A2939at 3387.638 kb on - strand, within Rru_A2939at 3387.638 kb on - strand, within Rru_A2939at 3387.926 kb on - strand, within Rru_A2939

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,385,975 + Rru_A2937 0.80 +1.0
3,386,020 + Rru_A2937 0.82 +0.6
3,386,100 - Rru_A2937 0.87 -0.3
3,387,490 - +6.8
3,387,490 - +1.5
3,387,494 + +1.8
3,387,494 + +2.9
3,387,588 + Rru_A2939 0.10 -2.2
3,387,588 + Rru_A2939 0.10 +1.4
3,387,588 + Rru_A2939 0.10 +0.0
3,387,588 + Rru_A2939 0.10 +1.9
3,387,589 - Rru_A2939 0.10 +6.3
3,387,589 - Rru_A2939 0.10 +4.2
3,387,589 - Rru_A2939 0.10 -1.3
3,387,638 - Rru_A2939 0.15 +0.6
3,387,638 - Rru_A2939 0.15 +4.0
3,387,638 - Rru_A2939 0.15 +4.3
3,387,926 - Rru_A2939 0.42 -0.1

Or see this region's nucleotide sequence