Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2882

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2881 and Rru_AR0053 are separated by 90 nucleotidesRru_AR0053 and Rru_A2882 are separated by 60 nucleotidesRru_A2882 and Rru_A2883 are separated by 225 nucleotides Rru_A2881: Rru_A2881 - virulence protein (NCBI), at 3,320,745 to 3,322,115 _A2881 Rru_AR0053: Rru_AR0053 - tRNA-Met (NCBI), at 3,322,206 to 3,322,281 _AR0053 Rru_A2882: Rru_A2882 - Sigma 70 (RpoD) (NCBI), at 3,322,342 to 3,324,432 _A2882 Rru_A2883: Rru_A2883 - DNA primase (NCBI), at 3,324,658 to 3,326,520 _A2883 Position (kb) 3322 3323 3324 3325Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3321.689 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.690 kb on - strand, within Rru_A2881at 3321.690 kb on - strand, within Rru_A2881at 3321.690 kb on - strand, within Rru_A2881at 3321.690 kb on - strand, within Rru_A2881at 3321.693 kb on + strand, within Rru_A2881at 3321.693 kb on + strand, within Rru_A2881at 3321.694 kb on - strand, within Rru_A2881at 3321.946 kb on - strand, within Rru_A2881at 3321.946 kb on - strand, within Rru_A2881at 3321.946 kb on - strand, within Rru_A2881at 3322.041 kb on + strandat 3322.041 kb on + strandat 3322.041 kb on + strandat 3322.041 kb on + strandat 3322.042 kb on - strandat 3322.042 kb on - strandat 3322.114 kb on - strandat 3322.114 kb on - strandat 3322.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,321,689 + Rru_A2881 0.69 +0.0
3,321,689 + Rru_A2881 0.69 -3.2
3,321,689 + Rru_A2881 0.69 -1.4
3,321,689 + Rru_A2881 0.69 +0.4
3,321,689 + Rru_A2881 0.69 -0.4
3,321,690 - Rru_A2881 0.69 +2.0
3,321,690 - Rru_A2881 0.69 +0.3
3,321,690 - Rru_A2881 0.69 -1.0
3,321,690 - Rru_A2881 0.69 -1.4
3,321,693 + Rru_A2881 0.69 -1.2
3,321,693 + Rru_A2881 0.69 +2.6
3,321,694 - Rru_A2881 0.69 +0.6
3,321,946 - Rru_A2881 0.88 -3.8
3,321,946 - Rru_A2881 0.88 +0.0
3,321,946 - Rru_A2881 0.88 -0.9
3,322,041 + +0.3
3,322,041 + -2.2
3,322,041 + +1.4
3,322,041 + +1.6
3,322,042 - -3.0
3,322,042 - -0.2
3,322,114 - -0.4
3,322,114 - -1.4
3,322,114 - -0.3

Or see this region's nucleotide sequence