Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2794

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2793 and Rru_A2794 are separated by 95 nucleotidesRru_A2794 and Rru_A2795 are separated by 21 nucleotidesRru_A2795 and Rru_A2796 are separated by 123 nucleotides Rru_A2793: Rru_A2793 - Protein of unknown function DUF1006 (NCBI), at 3,227,291 to 3,228,472 _A2793 Rru_A2794: Rru_A2794 - Deoxycytidine triphosphate deaminase (NCBI), at 3,228,568 to 3,229,155 _A2794 Rru_A2795: Rru_A2795 - hypothetical protein (NCBI), at 3,229,177 to 3,229,581 _A2795 Rru_A2796: Rru_A2796 - Heavy metal translocatin P-type ATPase (NCBI), at 3,229,705 to 3,231,861 _A2796 Position (kb) 3228 3229 3230Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3227.639 kb on + strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.640 kb on - strand, within Rru_A2793at 3227.640 kb on - strand, within Rru_A2793at 3227.858 kb on + strand, within Rru_A2793at 3227.858 kb on + strand, within Rru_A2793at 3227.859 kb on - strand, within Rru_A2793at 3227.994 kb on - strand, within Rru_A2793at 3228.095 kb on + strand, within Rru_A2793at 3228.096 kb on - strand, within Rru_A2793at 3228.099 kb on + strand, within Rru_A2793at 3228.099 kb on + strand, within Rru_A2793at 3228.099 kb on + strand, within Rru_A2793at 3228.100 kb on - strand, within Rru_A2793at 3228.100 kb on - strand, within Rru_A2793at 3228.100 kb on - strand, within Rru_A2793at 3228.209 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.225 kb on - strand, within Rru_A2793at 3228.225 kb on - strand, within Rru_A2793at 3228.225 kb on - strand, within Rru_A2793at 3228.225 kb on - strand, within Rru_A2793at 3228.248 kb on + strand, within Rru_A2793at 3228.254 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.258 kb on - strand, within Rru_A2793at 3228.258 kb on - strand, within Rru_A2793at 3228.258 kb on - strand, within Rru_A2793at 3228.258 kb on - strand, within Rru_A2793at 3229.153 kb on + strandat 3229.422 kb on - strand, within Rru_A2795at 3229.499 kb on - strand, within Rru_A2795at 3229.572 kb on + strandat 3229.572 kb on + strandat 3229.572 kb on + strandat 3229.572 kb on + strandat 3229.573 kb on - strandat 3229.573 kb on - strandat 3229.573 kb on - strandat 3229.573 kb on - strandat 3229.574 kb on + strandat 3229.574 kb on + strandat 3229.574 kb on + strandat 3229.574 kb on + strandat 3229.574 kb on + strandat 3229.574 kb on + strandat 3229.575 kb on - strandat 3229.575 kb on - strandat 3229.575 kb on - strandat 3229.575 kb on - strandat 3229.626 kb on + strandat 3229.627 kb on - strandat 3229.706 kb on + strandat 3229.707 kb on - strandat 3229.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,227,639 + Rru_A2793 0.29 -0.5
3,227,639 + Rru_A2793 0.29 -0.4
3,227,639 + Rru_A2793 0.29 -1.1
3,227,639 + Rru_A2793 0.29 -0.0
3,227,639 + Rru_A2793 0.29 -0.5
3,227,640 - Rru_A2793 0.30 +1.5
3,227,640 - Rru_A2793 0.30 +0.1
3,227,858 + Rru_A2793 0.48 +0.9
3,227,858 + Rru_A2793 0.48 -1.7
3,227,859 - Rru_A2793 0.48 -0.9
3,227,994 - Rru_A2793 0.59 -0.1
3,228,095 + Rru_A2793 0.68 -1.1
3,228,096 - Rru_A2793 0.68 -1.7
3,228,099 + Rru_A2793 0.68 +0.6
3,228,099 + Rru_A2793 0.68 -0.7
3,228,099 + Rru_A2793 0.68 +2.7
3,228,100 - Rru_A2793 0.68 -1.4
3,228,100 - Rru_A2793 0.68 +1.1
3,228,100 - Rru_A2793 0.68 -0.8
3,228,209 + Rru_A2793 0.78 +0.3
3,228,224 + Rru_A2793 0.79 +2.1
3,228,224 + Rru_A2793 0.79 +2.0
3,228,224 + Rru_A2793 0.79 +0.1
3,228,224 + Rru_A2793 0.79 -0.0
3,228,224 + Rru_A2793 0.79 -0.1
3,228,224 + Rru_A2793 0.79 -1.3
3,228,224 + Rru_A2793 0.79 -3.1
3,228,225 - Rru_A2793 0.79 +0.3
3,228,225 - Rru_A2793 0.79 +2.3
3,228,225 - Rru_A2793 0.79 -0.8
3,228,225 - Rru_A2793 0.79 -0.3
3,228,248 + Rru_A2793 0.81 +1.4
3,228,254 + Rru_A2793 0.81 +0.5
3,228,257 + Rru_A2793 0.82 -2.3
3,228,257 + Rru_A2793 0.82 +0.7
3,228,257 + Rru_A2793 0.82 -0.7
3,228,257 + Rru_A2793 0.82 +0.4
3,228,257 + Rru_A2793 0.82 -0.6
3,228,257 + Rru_A2793 0.82 -0.1
3,228,257 + Rru_A2793 0.82 -2.0
3,228,257 + Rru_A2793 0.82 +0.2
3,228,257 + Rru_A2793 0.82 +0.3
3,228,257 + Rru_A2793 0.82 +0.3
3,228,258 - Rru_A2793 0.82 +0.1
3,228,258 - Rru_A2793 0.82 -1.7
3,228,258 - Rru_A2793 0.82 +1.9
3,228,258 - Rru_A2793 0.82 +0.7
3,229,153 + +0.3
3,229,422 - Rru_A2795 0.60 -0.4
3,229,499 - Rru_A2795 0.80 +0.7
3,229,572 + -1.1
3,229,572 + +0.4
3,229,572 + +0.5
3,229,572 + +3.5
3,229,573 - +1.9
3,229,573 - -1.6
3,229,573 - -0.7
3,229,573 - -0.8
3,229,574 + +1.1
3,229,574 + -3.7
3,229,574 + +0.8
3,229,574 + +0.6
3,229,574 + +1.3
3,229,574 + +1.6
3,229,575 - +0.9
3,229,575 - -0.9
3,229,575 - +0.8
3,229,575 - +0.9
3,229,626 + -1.1
3,229,627 - -1.2
3,229,706 + +1.2
3,229,707 - +0.1
3,229,707 - +0.5

Or see this region's nucleotide sequence