Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2792

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2790 and Rru_A2791 are separated by 86 nucleotidesRru_A2791 and Rru_A2792 are separated by 54 nucleotidesRru_A2792 and Rru_A2793 are separated by 6 nucleotides Rru_A2790: Rru_A2790 - Transcriptional Regulator, MarR family (NCBI), at 3,225,309 to 3,225,821 _A2790 Rru_A2791: Rru_A2791 - DeoxyUTP pyrophosphatase subfamily 1 (NCBI), at 3,225,908 to 3,226,372 _A2791 Rru_A2792: Rru_A2792 - Thymidylate synthase (FAD) (NCBI), at 3,226,427 to 3,227,284 _A2792 Rru_A2793: Rru_A2793 - Protein of unknown function DUF1006 (NCBI), at 3,227,291 to 3,228,472 _A2793 Position (kb) 3226 3227 3228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3225.462 kb on + strand, within Rru_A2790at 3225.484 kb on - strand, within Rru_A2790at 3225.778 kb on - strandat 3225.819 kb on + strandat 3225.819 kb on + strandat 3225.819 kb on + strandat 3225.820 kb on - strandat 3225.854 kb on + strandat 3227.282 kb on + strandat 3227.282 kb on + strandat 3227.282 kb on + strandat 3227.283 kb on - strandat 3227.371 kb on + strandat 3227.489 kb on + strand, within Rru_A2793at 3227.489 kb on + strand, within Rru_A2793at 3227.490 kb on - strand, within Rru_A2793at 3227.519 kb on + strand, within Rru_A2793at 3227.519 kb on + strand, within Rru_A2793at 3227.519 kb on + strand, within Rru_A2793at 3227.520 kb on - strand, within Rru_A2793at 3227.520 kb on - strand, within Rru_A2793at 3227.550 kb on - strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.639 kb on + strand, within Rru_A2793at 3227.640 kb on - strand, within Rru_A2793at 3227.640 kb on - strand, within Rru_A2793at 3227.858 kb on + strand, within Rru_A2793at 3227.858 kb on + strand, within Rru_A2793at 3227.859 kb on - strand, within Rru_A2793at 3227.994 kb on - strand, within Rru_A2793at 3228.095 kb on + strand, within Rru_A2793at 3228.096 kb on - strand, within Rru_A2793at 3228.099 kb on + strand, within Rru_A2793at 3228.099 kb on + strand, within Rru_A2793at 3228.099 kb on + strand, within Rru_A2793at 3228.100 kb on - strand, within Rru_A2793at 3228.100 kb on - strand, within Rru_A2793at 3228.100 kb on - strand, within Rru_A2793at 3228.209 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.224 kb on + strand, within Rru_A2793at 3228.225 kb on - strand, within Rru_A2793at 3228.225 kb on - strand, within Rru_A2793at 3228.225 kb on - strand, within Rru_A2793at 3228.225 kb on - strand, within Rru_A2793at 3228.248 kb on + strand, within Rru_A2793at 3228.254 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.257 kb on + strand, within Rru_A2793at 3228.258 kb on - strand, within Rru_A2793at 3228.258 kb on - strand, within Rru_A2793at 3228.258 kb on - strand, within Rru_A2793at 3228.258 kb on - strand, within Rru_A2793

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,225,462 + Rru_A2790 0.30 +0.6
3,225,484 - Rru_A2790 0.34 -1.6
3,225,778 - +0.4
3,225,819 + -3.5
3,225,819 + -1.3
3,225,819 + +1.9
3,225,820 - -0.1
3,225,854 + -0.9
3,227,282 + +3.2
3,227,282 + +0.4
3,227,282 + +1.1
3,227,283 - +1.0
3,227,371 + -0.2
3,227,489 + Rru_A2793 0.17 +1.5
3,227,489 + Rru_A2793 0.17 +1.0
3,227,490 - Rru_A2793 0.17 +3.3
3,227,519 + Rru_A2793 0.19 -2.5
3,227,519 + Rru_A2793 0.19 -1.9
3,227,519 + Rru_A2793 0.19 +0.2
3,227,520 - Rru_A2793 0.19 -0.4
3,227,520 - Rru_A2793 0.19 -1.6
3,227,550 - Rru_A2793 0.22 -1.0
3,227,639 + Rru_A2793 0.29 -0.5
3,227,639 + Rru_A2793 0.29 -0.4
3,227,639 + Rru_A2793 0.29 -1.1
3,227,639 + Rru_A2793 0.29 -0.0
3,227,639 + Rru_A2793 0.29 -0.5
3,227,640 - Rru_A2793 0.30 +1.5
3,227,640 - Rru_A2793 0.30 +0.1
3,227,858 + Rru_A2793 0.48 +0.9
3,227,858 + Rru_A2793 0.48 -1.7
3,227,859 - Rru_A2793 0.48 -0.9
3,227,994 - Rru_A2793 0.59 -0.1
3,228,095 + Rru_A2793 0.68 -1.1
3,228,096 - Rru_A2793 0.68 -1.7
3,228,099 + Rru_A2793 0.68 +0.6
3,228,099 + Rru_A2793 0.68 -0.7
3,228,099 + Rru_A2793 0.68 +2.7
3,228,100 - Rru_A2793 0.68 -1.4
3,228,100 - Rru_A2793 0.68 +1.1
3,228,100 - Rru_A2793 0.68 -0.8
3,228,209 + Rru_A2793 0.78 +0.3
3,228,224 + Rru_A2793 0.79 +2.1
3,228,224 + Rru_A2793 0.79 +2.0
3,228,224 + Rru_A2793 0.79 +0.1
3,228,224 + Rru_A2793 0.79 -0.0
3,228,224 + Rru_A2793 0.79 -0.1
3,228,224 + Rru_A2793 0.79 -1.3
3,228,224 + Rru_A2793 0.79 -3.1
3,228,225 - Rru_A2793 0.79 +0.3
3,228,225 - Rru_A2793 0.79 +2.3
3,228,225 - Rru_A2793 0.79 -0.8
3,228,225 - Rru_A2793 0.79 -0.3
3,228,248 + Rru_A2793 0.81 +1.4
3,228,254 + Rru_A2793 0.81 +0.5
3,228,257 + Rru_A2793 0.82 -2.3
3,228,257 + Rru_A2793 0.82 +0.7
3,228,257 + Rru_A2793 0.82 -0.7
3,228,257 + Rru_A2793 0.82 +0.4
3,228,257 + Rru_A2793 0.82 -0.6
3,228,257 + Rru_A2793 0.82 -0.1
3,228,257 + Rru_A2793 0.82 -2.0
3,228,257 + Rru_A2793 0.82 +0.2
3,228,257 + Rru_A2793 0.82 +0.3
3,228,257 + Rru_A2793 0.82 +0.3
3,228,258 - Rru_A2793 0.82 +0.1
3,228,258 - Rru_A2793 0.82 -1.7
3,228,258 - Rru_A2793 0.82 +1.9
3,228,258 - Rru_A2793 0.82 +0.7

Or see this region's nucleotide sequence