Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2790 and Rru_A2791 are separated by 86 nucleotides Rru_A2791 and Rru_A2792 are separated by 54 nucleotides Rru_A2792 and Rru_A2793 are separated by 6 nucleotides
Rru_A2790: Rru_A2790 - Transcriptional Regulator, MarR family (NCBI), at 3,225,309 to 3,225,821
_A2790
Rru_A2791: Rru_A2791 - DeoxyUTP pyrophosphatase subfamily 1 (NCBI), at 3,225,908 to 3,226,372
_A2791
Rru_A2792: Rru_A2792 - Thymidylate synthase (FAD) (NCBI), at 3,226,427 to 3,227,284
_A2792
Rru_A2793: Rru_A2793 - Protein of unknown function DUF1006 (NCBI), at 3,227,291 to 3,228,472
_A2793
Position (kb)
3226
3227
3228 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3225.462 kb on + strand, within Rru_A2790 at 3225.484 kb on - strand, within Rru_A2790 at 3225.778 kb on - strand at 3225.819 kb on + strand at 3225.819 kb on + strand at 3225.819 kb on + strand at 3225.820 kb on - strand at 3225.854 kb on + strand at 3227.282 kb on + strand at 3227.282 kb on + strand at 3227.282 kb on + strand at 3227.283 kb on - strand at 3227.371 kb on + strand at 3227.489 kb on + strand, within Rru_A2793 at 3227.489 kb on + strand, within Rru_A2793 at 3227.490 kb on - strand, within Rru_A2793 at 3227.519 kb on + strand, within Rru_A2793 at 3227.519 kb on + strand, within Rru_A2793 at 3227.519 kb on + strand, within Rru_A2793 at 3227.520 kb on - strand, within Rru_A2793 at 3227.520 kb on - strand, within Rru_A2793 at 3227.550 kb on - strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.640 kb on - strand, within Rru_A2793 at 3227.640 kb on - strand, within Rru_A2793 at 3227.858 kb on + strand, within Rru_A2793 at 3227.858 kb on + strand, within Rru_A2793 at 3227.859 kb on - strand, within Rru_A2793 at 3227.994 kb on - strand, within Rru_A2793 at 3228.095 kb on + strand, within Rru_A2793 at 3228.096 kb on - strand, within Rru_A2793 at 3228.099 kb on + strand, within Rru_A2793 at 3228.099 kb on + strand, within Rru_A2793 at 3228.099 kb on + strand, within Rru_A2793 at 3228.100 kb on - strand, within Rru_A2793 at 3228.100 kb on - strand, within Rru_A2793 at 3228.100 kb on - strand, within Rru_A2793 at 3228.209 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.225 kb on - strand, within Rru_A2793 at 3228.225 kb on - strand, within Rru_A2793 at 3228.225 kb on - strand, within Rru_A2793 at 3228.225 kb on - strand, within Rru_A2793 at 3228.248 kb on + strand, within Rru_A2793 at 3228.254 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.258 kb on - strand, within Rru_A2793 at 3228.258 kb on - strand, within Rru_A2793 at 3228.258 kb on - strand, within Rru_A2793 at 3228.258 kb on - strand, within Rru_A2793
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,225,462 + Rru_A2790 0.30 +0.6 3,225,484 - Rru_A2790 0.34 -1.6 3,225,778 - +0.4 3,225,819 + -3.5 3,225,819 + -1.3 3,225,819 + +1.9 3,225,820 - -0.1 3,225,854 + -0.9 3,227,282 + +3.2 3,227,282 + +0.4 3,227,282 + +1.1 3,227,283 - +1.0 3,227,371 + -0.2 3,227,489 + Rru_A2793 0.17 +1.5 3,227,489 + Rru_A2793 0.17 +1.0 3,227,490 - Rru_A2793 0.17 +3.3 3,227,519 + Rru_A2793 0.19 -2.5 3,227,519 + Rru_A2793 0.19 -1.9 3,227,519 + Rru_A2793 0.19 +0.2 3,227,520 - Rru_A2793 0.19 -0.4 3,227,520 - Rru_A2793 0.19 -1.6 3,227,550 - Rru_A2793 0.22 -1.0 3,227,639 + Rru_A2793 0.29 -0.5 3,227,639 + Rru_A2793 0.29 -0.4 3,227,639 + Rru_A2793 0.29 -1.1 3,227,639 + Rru_A2793 0.29 -0.0 3,227,639 + Rru_A2793 0.29 -0.5 3,227,640 - Rru_A2793 0.30 +1.5 3,227,640 - Rru_A2793 0.30 +0.1 3,227,858 + Rru_A2793 0.48 +0.9 3,227,858 + Rru_A2793 0.48 -1.7 3,227,859 - Rru_A2793 0.48 -0.9 3,227,994 - Rru_A2793 0.59 -0.1 3,228,095 + Rru_A2793 0.68 -1.1 3,228,096 - Rru_A2793 0.68 -1.7 3,228,099 + Rru_A2793 0.68 +0.6 3,228,099 + Rru_A2793 0.68 -0.7 3,228,099 + Rru_A2793 0.68 +2.7 3,228,100 - Rru_A2793 0.68 -1.4 3,228,100 - Rru_A2793 0.68 +1.1 3,228,100 - Rru_A2793 0.68 -0.8 3,228,209 + Rru_A2793 0.78 +0.3 3,228,224 + Rru_A2793 0.79 +2.1 3,228,224 + Rru_A2793 0.79 +2.0 3,228,224 + Rru_A2793 0.79 +0.1 3,228,224 + Rru_A2793 0.79 -0.0 3,228,224 + Rru_A2793 0.79 -0.1 3,228,224 + Rru_A2793 0.79 -1.3 3,228,224 + Rru_A2793 0.79 -3.1 3,228,225 - Rru_A2793 0.79 +0.3 3,228,225 - Rru_A2793 0.79 +2.3 3,228,225 - Rru_A2793 0.79 -0.8 3,228,225 - Rru_A2793 0.79 -0.3 3,228,248 + Rru_A2793 0.81 +1.4 3,228,254 + Rru_A2793 0.81 +0.5 3,228,257 + Rru_A2793 0.82 -2.3 3,228,257 + Rru_A2793 0.82 +0.7 3,228,257 + Rru_A2793 0.82 -0.7 3,228,257 + Rru_A2793 0.82 +0.4 3,228,257 + Rru_A2793 0.82 -0.6 3,228,257 + Rru_A2793 0.82 -0.1 3,228,257 + Rru_A2793 0.82 -2.0 3,228,257 + Rru_A2793 0.82 +0.2 3,228,257 + Rru_A2793 0.82 +0.3 3,228,257 + Rru_A2793 0.82 +0.3 3,228,258 - Rru_A2793 0.82 +0.1 3,228,258 - Rru_A2793 0.82 -1.7 3,228,258 - Rru_A2793 0.82 +1.9 3,228,258 - Rru_A2793 0.82 +0.7
Or see this region's nucleotide sequence