Strain Fitness in Rhodospirillum rubrum S1H around Rru_AR0049

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2702 and Rru_AR0049 are separated by 93 nucleotidesRru_AR0049 and Rru_AR0050 are separated by 27 nucleotidesRru_AR0050 and Rru_A2703 are separated by 37 nucleotides Rru_A2702: Rru_A2702 - Translation elongation factor Tu (NCBI), at 3,125,604 to 3,126,794 _A2702 Rru_AR0049: Rru_AR0049 - tRNA-Gly (NCBI), at 3,126,888 to 3,126,961 _AR0049 Rru_AR0050: Rru_AR0050 - tRNA-Tyr (NCBI), at 3,126,989 to 3,127,074 _AR0050 Rru_A2703: Rru_A2703 - RNA methyltransferase TrmH, group 3 (NCBI), at 3,127,112 to 3,128,158 _A2703 Position (kb) 3126 3127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3126.814 kb on - strandat 3126.870 kb on - strandat 3126.870 kb on - strandat 3127.741 kb on + strand, within Rru_A2703at 3127.742 kb on - strand, within Rru_A2703at 3127.906 kb on + strand, within Rru_A2703at 3127.906 kb on + strand, within Rru_A2703at 3127.906 kb on + strand, within Rru_A2703at 3127.907 kb on - strand, within Rru_A2703at 3127.907 kb on - strand, within Rru_A2703at 3127.907 kb on - strand, within Rru_A2703at 3127.907 kb on - strand, within Rru_A2703at 3127.907 kb on - strand, within Rru_A2703

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,126,814 - -1.7
3,126,870 - +0.8
3,126,870 - +0.8
3,127,741 + Rru_A2703 0.60 +0.8
3,127,742 - Rru_A2703 0.60 +0.1
3,127,906 + Rru_A2703 0.76 -4.0
3,127,906 + Rru_A2703 0.76 -2.2
3,127,906 + Rru_A2703 0.76 -1.1
3,127,907 - Rru_A2703 0.76 -1.9
3,127,907 - Rru_A2703 0.76 -2.4
3,127,907 - Rru_A2703 0.76 -0.2
3,127,907 - Rru_A2703 0.76 -1.7
3,127,907 - Rru_A2703 0.76 -1.7

Or see this region's nucleotide sequence