Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2700

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2698 and Rru_A2699 are separated by 4 nucleotidesRru_A2699 and Rru_A2700 are separated by 151 nucleotidesRru_A2700 and Rru_A2701 are separated by 4 nucleotidesRru_A2701 and Rru_AR0048 are separated by 151 nucleotidesRru_AR0048 and Rru_A2702 are separated by 343 nucleotides Rru_A2698: Rru_A2698 - Ribosomal protein L1 (NCBI), at 3,123,015 to 3,123,716 _A2698 Rru_A2699: Rru_A2699 - Ribosomal protein L11 (NCBI), at 3,123,721 to 3,124,149 _A2699 Rru_A2700: Rru_A2700 - NusG antitermination factor (NCBI), at 3,124,301 to 3,124,831 _A2700 Rru_A2701: Rru_A2701 - SecE subunit of protein translocation complex (NCBI), at 3,124,836 to 3,125,033 _A2701 Rru_AR0048: Rru_AR0048 - tRNA-Trp (NCBI), at 3,125,185 to 3,125,260 _AR0048 Rru_A2702: Rru_A2702 - Translation elongation factor Tu (NCBI), at 3,125,604 to 3,126,794 _A2702 Position (kb) 3124 3125Strain fitness (log2 ratio) -2 -1 0 1at 3124.173 kb on - strandat 3124.195 kb on - strandat 3124.195 kb on - strandat 3124.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,124,173 - +0.8
3,124,195 - +0.6
3,124,195 - +1.3
3,124,195 - -1.9

Or see this region's nucleotide sequence