Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2662 and Rru_A2663 are separated by 142 nucleotides Rru_A2663 and Rru_A2664 are separated by 167 nucleotides Rru_A2664 and Rru_A2665 are separated by 156 nucleotides Rru_A2665 and Rru_A2666 are separated by 93 nucleotides
Rru_A2662: Rru_A2662 - Peptidase S1C, Do (NCBI), at 3,092,389 to 3,093,864
_A2662
Rru_A2663: Rru_A2663 - Ribosomal protein L17 (NCBI), at 3,094,007 to 3,094,429
_A2663
Rru_A2664: Rru_A2664 - DNA-directed RNA polymerase, alpha subunit (NCBI), at 3,094,597 to 3,095,619
_A2664
Rru_A2665: Rru_A2665 - Ribosomal protein S11 (NCBI), at 3,095,776 to 3,096,165
_A2665
Rru_A2666: Rru_A2666 - Ribosomal protein S13 (NCBI), at 3,096,259 to 3,096,627
_A2666
Position (kb) 3094
3095
3096 Strain fitness (log2 ratio) -1
0
1
2 at 3093.639 kb on + strand, within Rru_A2662 at 3093.639 kb on + strand, within Rru_A2662 at 3093.640 kb on - strand, within Rru_A2662 at 3093.640 kb on - strand, within Rru_A2662 at 3093.640 kb on - strand, within Rru_A2662 at 3094.008 kb on + strand at 3094.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,093,639 + Rru_A2662 0.85 +2.4 3,093,639 + Rru_A2662 0.85 +0.9 3,093,640 - Rru_A2662 0.85 -1.0 3,093,640 - Rru_A2662 0.85 +0.3 3,093,640 - Rru_A2662 0.85 -0.3 3,094,008 + -0.2 3,094,602 - -1.2
Or see this region's nucleotide sequence