Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2627

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2626 and Rru_A2627 are separated by 248 nucleotidesRru_A2627 and Rru_A2628 are separated by 50 nucleotides Rru_A2626: Rru_A2626 - chaperone DnaJ (NCBI), at 3,055,572 to 3,056,552 _A2626 Rru_A2627: Rru_A2627 - Pyridoxamine 5'-phosphate oxidase (NCBI), at 3,056,801 to 3,057,406 _A2627 Rru_A2628: Rru_A2628 - Cation efflux protein (NCBI), at 3,057,457 to 3,058,434 _A2628 Position (kb) 3056 3057 3058Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 3056.297 kb on - strand, within Rru_A2626at 3056.398 kb on + strand, within Rru_A2626at 3056.399 kb on - strand, within Rru_A2626at 3056.399 kb on - strand, within Rru_A2626at 3056.411 kb on + strand, within Rru_A2626at 3056.412 kb on - strand, within Rru_A2626at 3056.486 kb on - strandat 3056.486 kb on - strandat 3056.537 kb on + strandat 3056.538 kb on - strandat 3056.538 kb on - strandat 3056.539 kb on + strandat 3056.540 kb on - strandat 3056.556 kb on + strandat 3056.556 kb on + strandat 3056.556 kb on + strandat 3056.556 kb on + strandat 3056.557 kb on - strandat 3056.557 kb on - strandat 3056.557 kb on - strandat 3056.622 kb on + strandat 3056.622 kb on + strandat 3056.623 kb on - strandat 3056.623 kb on - strandat 3056.623 kb on - strandat 3056.623 kb on - strandat 3056.669 kb on + strandat 3056.670 kb on - strandat 3056.670 kb on - strandat 3057.405 kb on - strandat 3057.416 kb on + strandat 3057.417 kb on - strandat 3057.417 kb on - strandat 3057.517 kb on + strandat 3057.517 kb on + strandat 3057.517 kb on + strandat 3057.517 kb on + strandat 3057.517 kb on + strandat 3057.518 kb on - strandat 3057.518 kb on - strandat 3057.518 kb on - strandat 3057.877 kb on + strand, within Rru_A2628at 3057.937 kb on + strand, within Rru_A2628at 3057.937 kb on + strand, within Rru_A2628at 3057.937 kb on + strand, within Rru_A2628at 3057.938 kb on - strand, within Rru_A2628at 3057.938 kb on - strand, within Rru_A2628at 3057.969 kb on - strand, within Rru_A2628at 3058.322 kb on + strand, within Rru_A2628at 3058.322 kb on + strand, within Rru_A2628at 3058.323 kb on - strand, within Rru_A2628at 3058.323 kb on - strand, within Rru_A2628at 3058.323 kb on - strand, within Rru_A2628at 3058.323 kb on - strand, within Rru_A2628at 3058.375 kb on + strandat 3058.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,056,297 - Rru_A2626 0.74 +1.9
3,056,398 + Rru_A2626 0.84 -2.1
3,056,399 - Rru_A2626 0.84 -2.0
3,056,399 - Rru_A2626 0.84 -0.2
3,056,411 + Rru_A2626 0.86 -1.7
3,056,412 - Rru_A2626 0.86 +1.2
3,056,486 - -1.4
3,056,486 - -1.3
3,056,537 + +3.4
3,056,538 - -2.4
3,056,538 - -3.0
3,056,539 + +0.9
3,056,540 - +0.9
3,056,556 + +1.0
3,056,556 + -0.9
3,056,556 + +2.9
3,056,556 + +1.4
3,056,557 - +0.1
3,056,557 - -1.7
3,056,557 - -0.1
3,056,622 + -0.9
3,056,622 + -0.1
3,056,623 - -1.7
3,056,623 - -1.1
3,056,623 - -3.1
3,056,623 - -0.1
3,056,669 + -2.2
3,056,670 - -2.3
3,056,670 - +0.3
3,057,405 - -3.0
3,057,416 + -3.1
3,057,417 - -1.4
3,057,417 - -2.4
3,057,517 + -0.7
3,057,517 + +2.4
3,057,517 + -2.6
3,057,517 + +3.2
3,057,517 + +0.6
3,057,518 - -2.6
3,057,518 - +0.0
3,057,518 - -2.6
3,057,877 + Rru_A2628 0.43 +1.4
3,057,937 + Rru_A2628 0.49 -3.3
3,057,937 + Rru_A2628 0.49 -0.7
3,057,937 + Rru_A2628 0.49 -0.8
3,057,938 - Rru_A2628 0.49 +0.4
3,057,938 - Rru_A2628 0.49 +0.1
3,057,969 - Rru_A2628 0.52 -0.1
3,058,322 + Rru_A2628 0.88 +7.4
3,058,322 + Rru_A2628 0.88 -1.0
3,058,323 - Rru_A2628 0.89 +1.4
3,058,323 - Rru_A2628 0.89 +0.0
3,058,323 - Rru_A2628 0.89 -1.1
3,058,323 - Rru_A2628 0.89 -1.0
3,058,375 + +0.6
3,058,376 - -2.7

Or see this region's nucleotide sequence