Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2618 and Rru_A2619 are separated by 60 nucleotides Rru_A2619 and Rru_A2620 are separated by 5 nucleotides Rru_A2620 and Rru_A2621 are separated by 68 nucleotides
Rru_A2618: Rru_A2618 - Polyprenyl synthetase (NCBI), at 3,046,037 to 3,046,954
_A2618
Rru_A2619: Rru_A2619 - Deoxyxylulose-5-phosphate synthase (NCBI), at 3,047,015 to 3,048,952
_A2619
Rru_A2620: Rru_A2620 - Hemolysin A (NCBI), at 3,048,958 to 3,049,752
_A2620
Rru_A2621: Rru_A2621 - Peptidase S49 (NCBI), at 3,049,821 to 3,051,602
_A2621
Position (kb)
3047
3048
3049 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 3046.169 kb on + strand, within Rru_A2618 at 3047.708 kb on + strand, within Rru_A2619 at 3047.708 kb on + strand, within Rru_A2619 at 3047.708 kb on + strand, within Rru_A2619 at 3047.763 kb on - strand, within Rru_A2619 at 3047.763 kb on - strand, within Rru_A2619 at 3047.766 kb on - strand, within Rru_A2619 at 3047.766 kb on - strand, within Rru_A2619 at 3047.984 kb on + strand, within Rru_A2619 at 3047.984 kb on + strand, within Rru_A2619 at 3047.984 kb on + strand, within Rru_A2619 at 3047.986 kb on + strand, within Rru_A2619 at 3047.986 kb on + strand, within Rru_A2619 at 3049.204 kb on - strand, within Rru_A2620 at 3049.215 kb on + strand, within Rru_A2620 at 3049.328 kb on - strand, within Rru_A2620 at 3049.328 kb on - strand, within Rru_A2620 at 3049.328 kb on - strand, within Rru_A2620 at 3049.816 kb on + strand at 3049.817 kb on - strand at 3049.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,046,169 + Rru_A2618 0.14 +0.9 3,047,708 + Rru_A2619 0.36 -0.1 3,047,708 + Rru_A2619 0.36 +3.6 3,047,708 + Rru_A2619 0.36 +1.9 3,047,763 - Rru_A2619 0.39 +7.4 3,047,763 - Rru_A2619 0.39 +7.6 3,047,766 - Rru_A2619 0.39 +7.4 3,047,766 - Rru_A2619 0.39 +7.7 3,047,984 + Rru_A2619 0.50 +2.5 3,047,984 + Rru_A2619 0.50 +1.0 3,047,984 + Rru_A2619 0.50 +0.7 3,047,986 + Rru_A2619 0.50 -2.3 3,047,986 + Rru_A2619 0.50 -0.0 3,049,204 - Rru_A2620 0.31 +7.7 3,049,215 + Rru_A2620 0.32 +7.3 3,049,328 - Rru_A2620 0.47 +7.9 3,049,328 - Rru_A2620 0.47 +7.6 3,049,328 - Rru_A2620 0.47 +7.6 3,049,816 + +0.5 3,049,817 - +1.2 3,049,817 - -0.4
Or see this region's nucleotide sequence