Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2602 and Rru_A2603 are separated by 267 nucleotides Rru_A2603 and Rru_A2604 are separated by 21 nucleotides
Rru_A2602: Rru_A2602 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 3,024,243 to 3,026,708
_A2602
Rru_A2603: Rru_A2603 - Two Component Transcriptional Regulator, LuxR family (NCBI), at 3,026,976 to 3,027,656
_A2603
Rru_A2604: Rru_A2604 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 3,027,678 to 3,029,714
_A2604
Position (kb)
3026
3027
3028 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3026.761 kb on - strand at 3026.822 kb on + strand at 3026.863 kb on + strand at 3026.863 kb on + strand at 3027.078 kb on + strand, within Rru_A2603 at 3027.246 kb on - strand, within Rru_A2603 at 3027.246 kb on - strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.349 kb on - strand, within Rru_A2603 at 3027.349 kb on - strand, within Rru_A2603 at 3027.349 kb on - strand, within Rru_A2603 at 3027.349 kb on - strand, within Rru_A2603 at 3027.551 kb on + strand, within Rru_A2603 at 3027.551 kb on + strand, within Rru_A2603 at 3027.551 kb on + strand, within Rru_A2603 at 3027.938 kb on + strand, within Rru_A2604 at 3027.938 kb on + strand, within Rru_A2604 at 3027.961 kb on + strand, within Rru_A2604 at 3027.962 kb on - strand, within Rru_A2604 at 3027.977 kb on - strand, within Rru_A2604 at 3028.127 kb on + strand, within Rru_A2604 at 3028.128 kb on - strand, within Rru_A2604 at 3028.267 kb on + strand, within Rru_A2604 at 3028.267 kb on + strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.364 kb on + strand, within Rru_A2604 at 3028.396 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.529 kb on - strand, within Rru_A2604 at 3028.529 kb on - strand, within Rru_A2604 at 3028.529 kb on - strand, within Rru_A2604 at 3028.539 kb on - strand, within Rru_A2604
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,026,761 - +0.3 3,026,822 + -0.0 3,026,863 + +1.6 3,026,863 + -1.3 3,027,078 + Rru_A2603 0.15 -0.4 3,027,246 - Rru_A2603 0.40 -0.4 3,027,246 - Rru_A2603 0.40 -2.5 3,027,348 + Rru_A2603 0.55 +0.6 3,027,348 + Rru_A2603 0.55 +2.4 3,027,348 + Rru_A2603 0.55 -1.3 3,027,348 + Rru_A2603 0.55 -3.4 3,027,348 + Rru_A2603 0.55 +0.3 3,027,349 - Rru_A2603 0.55 +0.0 3,027,349 - Rru_A2603 0.55 -0.5 3,027,349 - Rru_A2603 0.55 +0.9 3,027,349 - Rru_A2603 0.55 +0.4 3,027,551 + Rru_A2603 0.84 -0.7 3,027,551 + Rru_A2603 0.84 +0.9 3,027,551 + Rru_A2603 0.84 +0.9 3,027,938 + Rru_A2604 0.13 -1.7 3,027,938 + Rru_A2604 0.13 +1.5 3,027,961 + Rru_A2604 0.14 +0.7 3,027,962 - Rru_A2604 0.14 +1.4 3,027,977 - Rru_A2604 0.15 +0.1 3,028,127 + Rru_A2604 0.22 -0.1 3,028,128 - Rru_A2604 0.22 -0.4 3,028,267 + Rru_A2604 0.29 +0.9 3,028,267 + Rru_A2604 0.29 -0.3 3,028,268 - Rru_A2604 0.29 -1.4 3,028,268 - Rru_A2604 0.29 -2.0 3,028,268 - Rru_A2604 0.29 +1.3 3,028,268 - Rru_A2604 0.29 +0.9 3,028,268 - Rru_A2604 0.29 -0.0 3,028,268 - Rru_A2604 0.29 +2.7 3,028,268 - Rru_A2604 0.29 +0.2 3,028,268 - Rru_A2604 0.29 +0.5 3,028,364 + Rru_A2604 0.34 +0.1 3,028,396 + Rru_A2604 0.35 -0.5 3,028,528 + Rru_A2604 0.42 +1.6 3,028,528 + Rru_A2604 0.42 -1.9 3,028,528 + Rru_A2604 0.42 +0.3 3,028,528 + Rru_A2604 0.42 +0.9 3,028,528 + Rru_A2604 0.42 -0.5 3,028,529 - Rru_A2604 0.42 -1.3 3,028,529 - Rru_A2604 0.42 +0.1 3,028,529 - Rru_A2604 0.42 +1.5 3,028,539 - Rru_A2604 0.42 -1.1
Or see this region's nucleotide sequence