Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2592

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2591 and Rru_A2592 are separated by 251 nucleotidesRru_A2592 and Rru_A2593 overlap by 25 nucleotides Rru_A2591: Rru_A2591 - hypothetical protein (NCBI), at 3,011,509 to 3,012,225 _A2591 Rru_A2592: Rru_A2592 - hypothetical protein (NCBI), at 3,012,477 to 3,013,172 _A2592 Rru_A2593: Rru_A2593 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 3,013,148 to 3,014,857 _A2593 Position (kb) 3012 3013 3014Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3011.733 kb on + strand, within Rru_A2591at 3011.733 kb on + strand, within Rru_A2591at 3011.733 kb on + strand, within Rru_A2591at 3011.733 kb on + strand, within Rru_A2591at 3011.734 kb on - strand, within Rru_A2591at 3011.734 kb on - strand, within Rru_A2591at 3011.810 kb on + strand, within Rru_A2591at 3011.810 kb on + strand, within Rru_A2591at 3011.810 kb on + strand, within Rru_A2591at 3011.811 kb on - strand, within Rru_A2591at 3011.811 kb on - strand, within Rru_A2591at 3011.811 kb on - strand, within Rru_A2591at 3011.811 kb on - strand, within Rru_A2591at 3011.811 kb on - strand, within Rru_A2591at 3011.811 kb on - strand, within Rru_A2591at 3011.811 kb on - strand, within Rru_A2591at 3011.811 kb on - strand, within Rru_A2591at 3011.972 kb on + strand, within Rru_A2591at 3011.972 kb on + strand, within Rru_A2591at 3011.973 kb on - strand, within Rru_A2591at 3011.973 kb on - strand, within Rru_A2591at 3013.066 kb on + strand, within Rru_A2592at 3013.066 kb on + strand, within Rru_A2592at 3013.067 kb on - strand, within Rru_A2592at 3013.067 kb on - strand, within Rru_A2592at 3013.212 kb on + strandat 3013.212 kb on + strandat 3013.213 kb on - strandat 3013.213 kb on - strandat 3013.213 kb on - strandat 3013.213 kb on - strandat 3013.213 kb on - strandat 3013.213 kb on - strandat 3013.247 kb on - strandat 3013.247 kb on - strandat 3013.575 kb on + strand, within Rru_A2593at 3013.701 kb on + strand, within Rru_A2593at 3013.701 kb on + strand, within Rru_A2593at 3013.702 kb on - strand, within Rru_A2593at 3013.971 kb on + strand, within Rru_A2593at 3014.163 kb on - strand, within Rru_A2593at 3014.169 kb on - strand, within Rru_A2593

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
3,011,733 + Rru_A2591 0.31 -3.2
3,011,733 + Rru_A2591 0.31 -2.3
3,011,733 + Rru_A2591 0.31 -0.2
3,011,733 + Rru_A2591 0.31 -0.5
3,011,734 - Rru_A2591 0.31 -1.9
3,011,734 - Rru_A2591 0.31 -0.1
3,011,810 + Rru_A2591 0.42 +0.5
3,011,810 + Rru_A2591 0.42 -1.6
3,011,810 + Rru_A2591 0.42 -3.0
3,011,811 - Rru_A2591 0.42 -0.9
3,011,811 - Rru_A2591 0.42 +1.4
3,011,811 - Rru_A2591 0.42 -1.4
3,011,811 - Rru_A2591 0.42 +0.9
3,011,811 - Rru_A2591 0.42 +0.5
3,011,811 - Rru_A2591 0.42 -2.2
3,011,811 - Rru_A2591 0.42 -2.1
3,011,811 - Rru_A2591 0.42 +0.0
3,011,972 + Rru_A2591 0.65 -3.9
3,011,972 + Rru_A2591 0.65 -2.2
3,011,973 - Rru_A2591 0.65 -0.7
3,011,973 - Rru_A2591 0.65 +1.9
3,013,066 + Rru_A2592 0.85 -2.4
3,013,066 + Rru_A2592 0.85 -1.7
3,013,067 - Rru_A2592 0.85 -0.5
3,013,067 - Rru_A2592 0.85 -0.9
3,013,212 + +1.3
3,013,212 + +0.9
3,013,213 - -1.1
3,013,213 - +1.9
3,013,213 - -1.9
3,013,213 - -2.8
3,013,213 - +1.9
3,013,213 - +1.2
3,013,247 - -1.4
3,013,247 - -1.3
3,013,575 + Rru_A2593 0.25 +0.7
3,013,701 + Rru_A2593 0.32 -0.9
3,013,701 + Rru_A2593 0.32 -0.6
3,013,702 - Rru_A2593 0.32 -1.7
3,013,971 + Rru_A2593 0.48 +0.1
3,014,163 - Rru_A2593 0.59 +1.6
3,014,169 - Rru_A2593 0.60 +1.1

Or see this region's nucleotide sequence