Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2583

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2581 and Rru_A2582 are separated by 3 nucleotidesRru_A2582 and Rru_A2583 are separated by 193 nucleotidesRru_A2583 and Rru_A2584 overlap by 4 nucleotidesRru_A2584 and Rru_A2585 overlap by 4 nucleotidesRru_A2585 and Rru_A2586 overlap by 4 nucleotides Rru_A2581: Rru_A2581 - hypothetical protein (NCBI), at 3,002,510 to 3,004,486 _A2581 Rru_A2582: Rru_A2582 - hypothetical protein (NCBI), at 3,004,490 to 3,005,017 _A2582 Rru_A2583: Rru_A2583 - hypothetical protein (NCBI), at 3,005,211 to 3,005,594 _A2583 Rru_A2584: Rru_A2584 - hypothetical protein (NCBI), at 3,005,591 to 3,005,986 _A2584 Rru_A2585: Rru_A2585 - hypothetical protein (NCBI), at 3,005,983 to 3,006,510 _A2585 Rru_A2586: Rru_A2586 - hypothetical protein (NCBI), at 3,006,507 to 3,006,983 _A2586 Position (kb) 3005 3006Strain fitness (log2 ratio) -3 -2 -1 0 1at 3004.470 kb on + strandat 3004.470 kb on + strandat 3004.471 kb on - strandat 3004.846 kb on - strand, within Rru_A2582at 3005.234 kb on - strandat 3006.080 kb on + strand, within Rru_A2585at 3006.080 kb on + strand, within Rru_A2585at 3006.297 kb on + strand, within Rru_A2585at 3006.298 kb on - strand, within Rru_A2585at 3006.298 kb on - strand, within Rru_A2585at 3006.327 kb on - strand, within Rru_A2585at 3006.341 kb on + strand, within Rru_A2585at 3006.341 kb on + strand, within Rru_A2585at 3006.342 kb on - strand, within Rru_A2585at 3006.342 kb on - strand, within Rru_A2585at 3006.342 kb on - strand, within Rru_A2585at 3006.342 kb on - strand, within Rru_A2585at 3006.435 kb on - strand, within Rru_A2585at 3006.435 kb on - strand, within Rru_A2585at 3006.465 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
3,004,470 + -0.4
3,004,470 + -0.7
3,004,471 - +0.1
3,004,846 - Rru_A2582 0.67 -1.3
3,005,234 - -0.9
3,006,080 + Rru_A2585 0.18 +0.1
3,006,080 + Rru_A2585 0.18 +1.2
3,006,297 + Rru_A2585 0.59 -3.4
3,006,298 - Rru_A2585 0.60 +0.0
3,006,298 - Rru_A2585 0.60 -1.1
3,006,327 - Rru_A2585 0.65 +0.9
3,006,341 + Rru_A2585 0.68 -1.0
3,006,341 + Rru_A2585 0.68 +0.4
3,006,342 - Rru_A2585 0.68 -1.4
3,006,342 - Rru_A2585 0.68 +0.3
3,006,342 - Rru_A2585 0.68 -2.5
3,006,342 - Rru_A2585 0.68 -2.1
3,006,435 - Rru_A2585 0.86 -1.3
3,006,435 - Rru_A2585 0.86 -0.6
3,006,465 + -1.7

Or see this region's nucleotide sequence