Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2579

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2578 and Rru_A2579 are separated by 63 nucleotidesRru_A2579 and Rru_A2580 are separated by 5 nucleotides Rru_A2578: Rru_A2578 - hypothetical protein (NCBI), at 2,999,351 to 3,000,868 _A2578 Rru_A2579: Rru_A2579 - hypothetical protein (NCBI), at 3,000,932 to 3,001,258 _A2579 Rru_A2580: Rru_A2580 - hypothetical protein (NCBI), at 3,001,264 to 3,002,517 _A2580 Position (kb) 3000 3001 3002Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2999.995 kb on + strand, within Rru_A2578at 2999.996 kb on - strand, within Rru_A2578at 2999.998 kb on - strand, within Rru_A2578at 2999.998 kb on - strand, within Rru_A2578at 2999.998 kb on - strand, within Rru_A2578at 3000.299 kb on + strand, within Rru_A2578at 3000.315 kb on - strand, within Rru_A2578at 3000.333 kb on + strand, within Rru_A2578at 3000.334 kb on - strand, within Rru_A2578at 3000.455 kb on + strand, within Rru_A2578at 3000.455 kb on + strand, within Rru_A2578at 3000.455 kb on + strand, within Rru_A2578at 3000.455 kb on + strand, within Rru_A2578at 3000.456 kb on - strand, within Rru_A2578at 3000.456 kb on - strand, within Rru_A2578at 3000.456 kb on - strand, within Rru_A2578at 3000.456 kb on - strand, within Rru_A2578at 3000.604 kb on - strand, within Rru_A2578at 3000.683 kb on - strand, within Rru_A2578at 3000.684 kb on + strand, within Rru_A2578at 3000.684 kb on + strand, within Rru_A2578at 3000.685 kb on - strand, within Rru_A2578at 3000.685 kb on - strand, within Rru_A2578at 3000.685 kb on - strand, within Rru_A2578at 3000.852 kb on + strandat 3000.852 kb on + strandat 3000.852 kb on + strandat 3000.852 kb on + strandat 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.133 kb on - strand, within Rru_A2580at 3002.133 kb on - strand, within Rru_A2580at 3002.133 kb on - strand, within Rru_A2580

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,999,995 + Rru_A2578 0.42 +2.9
2,999,996 - Rru_A2578 0.42 -1.7
2,999,998 - Rru_A2578 0.43 -0.1
2,999,998 - Rru_A2578 0.43 -0.4
2,999,998 - Rru_A2578 0.43 +1.7
3,000,299 + Rru_A2578 0.62 -1.8
3,000,315 - Rru_A2578 0.64 -0.2
3,000,333 + Rru_A2578 0.65 +0.6
3,000,334 - Rru_A2578 0.65 -1.4
3,000,455 + Rru_A2578 0.73 +0.4
3,000,455 + Rru_A2578 0.73 +1.7
3,000,455 + Rru_A2578 0.73 -2.2
3,000,455 + Rru_A2578 0.73 +0.6
3,000,456 - Rru_A2578 0.73 -2.2
3,000,456 - Rru_A2578 0.73 -0.1
3,000,456 - Rru_A2578 0.73 +0.9
3,000,456 - Rru_A2578 0.73 -0.4
3,000,604 - Rru_A2578 0.83 -1.5
3,000,683 - Rru_A2578 0.88 +0.1
3,000,684 + Rru_A2578 0.88 -1.3
3,000,684 + Rru_A2578 0.88 -1.1
3,000,685 - Rru_A2578 0.88 -1.0
3,000,685 - Rru_A2578 0.88 +2.6
3,000,685 - Rru_A2578 0.88 -0.1
3,000,852 + +1.7
3,000,852 + +1.2
3,000,852 + +1.1
3,000,852 + -1.1
3,002,132 + Rru_A2580 0.69 -1.1
3,002,132 + Rru_A2580 0.69 -3.0
3,002,132 + Rru_A2580 0.69 +1.9
3,002,132 + Rru_A2580 0.69 -2.3
3,002,132 + Rru_A2580 0.69 +0.2
3,002,132 + Rru_A2580 0.69 -1.8
3,002,133 - Rru_A2580 0.69 -1.4
3,002,133 - Rru_A2580 0.69 +0.1
3,002,133 - Rru_A2580 0.69 +0.0

Or see this region's nucleotide sequence