Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2578 and Rru_A2579 are separated by 63 nucleotides Rru_A2579 and Rru_A2580 are separated by 5 nucleotides
Rru_A2578: Rru_A2578 - hypothetical protein (NCBI), at 2,999,351 to 3,000,868
_A2578
Rru_A2579: Rru_A2579 - hypothetical protein (NCBI), at 3,000,932 to 3,001,258
_A2579
Rru_A2580: Rru_A2580 - hypothetical protein (NCBI), at 3,001,264 to 3,002,517
_A2580
Position (kb)
3000
3001
3002 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2999.995 kb on + strand, within Rru_A2578 at 2999.996 kb on - strand, within Rru_A2578 at 2999.998 kb on - strand, within Rru_A2578 at 2999.998 kb on - strand, within Rru_A2578 at 2999.998 kb on - strand, within Rru_A2578 at 3000.299 kb on + strand, within Rru_A2578 at 3000.315 kb on - strand, within Rru_A2578 at 3000.333 kb on + strand, within Rru_A2578 at 3000.334 kb on - strand, within Rru_A2578 at 3000.455 kb on + strand, within Rru_A2578 at 3000.455 kb on + strand, within Rru_A2578 at 3000.455 kb on + strand, within Rru_A2578 at 3000.455 kb on + strand, within Rru_A2578 at 3000.456 kb on - strand, within Rru_A2578 at 3000.456 kb on - strand, within Rru_A2578 at 3000.456 kb on - strand, within Rru_A2578 at 3000.456 kb on - strand, within Rru_A2578 at 3000.604 kb on - strand, within Rru_A2578 at 3000.683 kb on - strand, within Rru_A2578 at 3000.684 kb on + strand, within Rru_A2578 at 3000.684 kb on + strand, within Rru_A2578 at 3000.685 kb on - strand, within Rru_A2578 at 3000.685 kb on - strand, within Rru_A2578 at 3000.685 kb on - strand, within Rru_A2578 at 3000.852 kb on + strand at 3000.852 kb on + strand at 3000.852 kb on + strand at 3000.852 kb on + strand at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.133 kb on - strand, within Rru_A2580 at 3002.133 kb on - strand, within Rru_A2580 at 3002.133 kb on - strand, within Rru_A2580
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,999,995 + Rru_A2578 0.42 +2.9 2,999,996 - Rru_A2578 0.42 -1.7 2,999,998 - Rru_A2578 0.43 -0.1 2,999,998 - Rru_A2578 0.43 -0.4 2,999,998 - Rru_A2578 0.43 +1.7 3,000,299 + Rru_A2578 0.62 -1.8 3,000,315 - Rru_A2578 0.64 -0.2 3,000,333 + Rru_A2578 0.65 +0.6 3,000,334 - Rru_A2578 0.65 -1.4 3,000,455 + Rru_A2578 0.73 +0.4 3,000,455 + Rru_A2578 0.73 +1.7 3,000,455 + Rru_A2578 0.73 -2.2 3,000,455 + Rru_A2578 0.73 +0.6 3,000,456 - Rru_A2578 0.73 -2.2 3,000,456 - Rru_A2578 0.73 -0.1 3,000,456 - Rru_A2578 0.73 +0.9 3,000,456 - Rru_A2578 0.73 -0.4 3,000,604 - Rru_A2578 0.83 -1.5 3,000,683 - Rru_A2578 0.88 +0.1 3,000,684 + Rru_A2578 0.88 -1.3 3,000,684 + Rru_A2578 0.88 -1.1 3,000,685 - Rru_A2578 0.88 -1.0 3,000,685 - Rru_A2578 0.88 +2.6 3,000,685 - Rru_A2578 0.88 -0.1 3,000,852 + +1.7 3,000,852 + +1.2 3,000,852 + +1.1 3,000,852 + -1.1 3,002,132 + Rru_A2580 0.69 -1.1 3,002,132 + Rru_A2580 0.69 -3.0 3,002,132 + Rru_A2580 0.69 +1.9 3,002,132 + Rru_A2580 0.69 -2.3 3,002,132 + Rru_A2580 0.69 +0.2 3,002,132 + Rru_A2580 0.69 -1.8 3,002,133 - Rru_A2580 0.69 -1.4 3,002,133 - Rru_A2580 0.69 +0.1 3,002,133 - Rru_A2580 0.69 +0.0
Or see this region's nucleotide sequence