Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2569

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2567 and Rru_A2568 are separated by 56 nucleotidesRru_A2568 and Rru_A2569 are separated by 29 nucleotidesRru_A2569 and Rru_A2570 are separated by 53 nucleotides Rru_A2567: Rru_A2567 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 2,986,624 to 2,987,817 _A2567 Rru_A2568: Rru_A2568 - HesB/YadR/YfhF (NCBI), at 2,987,874 to 2,988,215 _A2568 Rru_A2569: Rru_A2569 - Protein of unknown function DUF59 (NCBI), at 2,988,245 to 2,988,643 _A2569 Rru_A2570: Rru_A2570 - Cysteine desulphurases, SufS (NCBI), at 2,988,697 to 2,989,965 _A2570 Position (kb) 2988 2989Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2987.410 kb on + strand, within Rru_A2567at 2987.514 kb on - strand, within Rru_A2567at 2987.514 kb on - strand, within Rru_A2567at 2987.564 kb on + strand, within Rru_A2567at 2987.565 kb on - strand, within Rru_A2567at 2987.565 kb on - strand, within Rru_A2567at 2987.594 kb on + strand, within Rru_A2567at 2987.744 kb on + strandat 2987.808 kb on + strandat 2987.829 kb on + strandat 2987.829 kb on + strandat 2987.834 kb on + strandat 2987.834 kb on + strandat 2987.843 kb on - strandat 2988.235 kb on - strandat 2988.254 kb on - strandat 2988.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,987,410 + Rru_A2567 0.66 -0.7
2,987,514 - Rru_A2567 0.75 +1.5
2,987,514 - Rru_A2567 0.75 -0.6
2,987,564 + Rru_A2567 0.79 +1.4
2,987,565 - Rru_A2567 0.79 +3.5
2,987,565 - Rru_A2567 0.79 +0.0
2,987,594 + Rru_A2567 0.81 -1.1
2,987,744 + -1.3
2,987,808 + +0.1
2,987,829 + +0.3
2,987,829 + -2.5
2,987,834 + -2.3
2,987,834 + -1.0
2,987,843 - -1.6
2,988,235 - -1.1
2,988,254 - -0.4
2,988,662 - +1.2

Or see this region's nucleotide sequence