Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2499

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2498 and Rru_A2499 overlap by 4 nucleotidesRru_A2499 and Rru_A2500 are separated by 164 nucleotidesRru_A2500 and Rru_A2501 are separated by 161 nucleotides Rru_A2498: Rru_A2498 - ABC transporter component (NCBI), at 2,905,442 to 2,906,425 _A2498 Rru_A2499: Rru_A2499 - ABC-2 transporter component (NCBI), at 2,906,422 to 2,907,252 _A2499 Rru_A2500: Rru_A2500 - Rhodanese-like (NCBI), at 2,907,417 to 2,907,977 _A2500 Rru_A2501: Rru_A2501 - conserved hypothetical cytosolic protein (NCBI), at 2,908,139 to 2,908,660 _A2501 Position (kb) 2906 2907 2908Strain fitness (log2 ratio) -3 -2 -1 0 1at 2907.241 kb on - strandat 2907.614 kb on - strand, within Rru_A2500at 2908.089 kb on + strandat 2908.089 kb on + strandat 2908.089 kb on + strandat 2908.090 kb on - strandat 2908.090 kb on - strandat 2908.090 kb on - strandat 2908.095 kb on + strandat 2908.095 kb on + strandat 2908.095 kb on + strandat 2908.096 kb on - strandat 2908.096 kb on - strandat 2908.150 kb on + strandat 2908.150 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,907,241 - -0.9
2,907,614 - Rru_A2500 0.35 -0.8
2,908,089 + +0.3
2,908,089 + +0.3
2,908,089 + +0.9
2,908,090 - -1.4
2,908,090 - -3.3
2,908,090 - -1.3
2,908,095 + -2.0
2,908,095 + -0.1
2,908,095 + -1.5
2,908,096 - -0.9
2,908,096 - -3.5
2,908,150 + -2.5
2,908,150 + -2.2

Or see this region's nucleotide sequence