Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2498

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2497 and Rru_A2498 are separated by 303 nucleotidesRru_A2498 and Rru_A2499 overlap by 4 nucleotidesRru_A2499 and Rru_A2500 are separated by 164 nucleotides Rru_A2497: Rru_A2497 - Peptide chain release factor 3 (NCBI), at 2,903,546 to 2,905,138 _A2497 Rru_A2498: Rru_A2498 - ABC transporter component (NCBI), at 2,905,442 to 2,906,425 _A2498 Rru_A2499: Rru_A2499 - ABC-2 transporter component (NCBI), at 2,906,422 to 2,907,252 _A2499 Rru_A2500: Rru_A2500 - Rhodanese-like (NCBI), at 2,907,417 to 2,907,977 _A2500 Position (kb) 2905 2906 2907Strain fitness (log2 ratio) -2 -1 0 1 2at 2904.598 kb on - strand, within Rru_A2497at 2904.724 kb on + strand, within Rru_A2497at 2904.724 kb on + strand, within Rru_A2497at 2904.725 kb on - strand, within Rru_A2497at 2904.846 kb on + strand, within Rru_A2497at 2904.846 kb on + strand, within Rru_A2497at 2904.847 kb on - strand, within Rru_A2497at 2904.850 kb on + strand, within Rru_A2497at 2904.851 kb on - strand, within Rru_A2497at 2904.851 kb on - strand, within Rru_A2497at 2904.851 kb on - strand, within Rru_A2497at 2904.910 kb on - strand, within Rru_A2497at 2904.915 kb on + strand, within Rru_A2497at 2904.916 kb on - strand, within Rru_A2497at 2904.916 kb on - strand, within Rru_A2497at 2905.103 kb on - strandat 2907.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,904,598 - Rru_A2497 0.66 -0.7
2,904,724 + Rru_A2497 0.74 -1.7
2,904,724 + Rru_A2497 0.74 -0.1
2,904,725 - Rru_A2497 0.74 -1.1
2,904,846 + Rru_A2497 0.82 -1.7
2,904,846 + Rru_A2497 0.82 -0.7
2,904,847 - Rru_A2497 0.82 -1.9
2,904,850 + Rru_A2497 0.82 +0.3
2,904,851 - Rru_A2497 0.82 -0.9
2,904,851 - Rru_A2497 0.82 +0.1
2,904,851 - Rru_A2497 0.82 -1.4
2,904,910 - Rru_A2497 0.86 +1.9
2,904,915 + Rru_A2497 0.86 -0.1
2,904,916 - Rru_A2497 0.86 -1.0
2,904,916 - Rru_A2497 0.86 -0.1
2,905,103 - -0.1
2,907,241 - -0.9

Or see this region's nucleotide sequence