Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2497 and Rru_A2498 are separated by 303 nucleotides Rru_A2498 and Rru_A2499 overlap by 4 nucleotides Rru_A2499 and Rru_A2500 are separated by 164 nucleotides
Rru_A2497: Rru_A2497 - Peptide chain release factor 3 (NCBI), at 2,903,546 to 2,905,138
_A2497
Rru_A2498: Rru_A2498 - ABC transporter component (NCBI), at 2,905,442 to 2,906,425
_A2498
Rru_A2499: Rru_A2499 - ABC-2 transporter component (NCBI), at 2,906,422 to 2,907,252
_A2499
Rru_A2500: Rru_A2500 - Rhodanese-like (NCBI), at 2,907,417 to 2,907,977
_A2500
Position (kb)
2905
2906
2907 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2904.598 kb on - strand, within Rru_A2497 at 2904.724 kb on + strand, within Rru_A2497 at 2904.724 kb on + strand, within Rru_A2497 at 2904.725 kb on - strand, within Rru_A2497 at 2904.846 kb on + strand, within Rru_A2497 at 2904.846 kb on + strand, within Rru_A2497 at 2904.847 kb on - strand, within Rru_A2497 at 2904.850 kb on + strand, within Rru_A2497 at 2904.851 kb on - strand, within Rru_A2497 at 2904.851 kb on - strand, within Rru_A2497 at 2904.851 kb on - strand, within Rru_A2497 at 2904.910 kb on - strand, within Rru_A2497 at 2904.915 kb on + strand, within Rru_A2497 at 2904.916 kb on - strand, within Rru_A2497 at 2904.916 kb on - strand, within Rru_A2497 at 2905.103 kb on - strand at 2907.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,904,598 - Rru_A2497 0.66 -0.7 2,904,724 + Rru_A2497 0.74 -1.7 2,904,724 + Rru_A2497 0.74 -0.1 2,904,725 - Rru_A2497 0.74 -1.1 2,904,846 + Rru_A2497 0.82 -1.7 2,904,846 + Rru_A2497 0.82 -0.7 2,904,847 - Rru_A2497 0.82 -1.9 2,904,850 + Rru_A2497 0.82 +0.3 2,904,851 - Rru_A2497 0.82 -0.9 2,904,851 - Rru_A2497 0.82 +0.1 2,904,851 - Rru_A2497 0.82 -1.4 2,904,910 - Rru_A2497 0.86 +1.9 2,904,915 + Rru_A2497 0.86 -0.1 2,904,916 - Rru_A2497 0.86 -1.0 2,904,916 - Rru_A2497 0.86 -0.1 2,905,103 - -0.1 2,907,241 - -0.9
Or see this region's nucleotide sequence