Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2494 and Rru_A2495 overlap by 4 nucleotides Rru_A2495 and Rru_A2496 overlap by 4 nucleotides
Rru_A2494: Rru_A2494 - Glycosyl transferase, family 2 (NCBI), at 2,900,277 to 2,901,245
_A2494
Rru_A2495: Rru_A2495 - Glycosyl transferase, family 2 (NCBI), at 2,901,242 to 2,902,219
_A2495
Rru_A2496: Rru_A2496 - Polysaccharide biosynthesis protein (NCBI), at 2,902,216 to 2,903,487
_A2496
Position (kb)
2901
2902
2903 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2900.443 kb on + strand, within Rru_A2494 at 2900.443 kb on + strand, within Rru_A2494 at 2900.444 kb on - strand, within Rru_A2494 at 2900.444 kb on - strand, within Rru_A2494 at 2900.444 kb on - strand, within Rru_A2494 at 2900.470 kb on + strand, within Rru_A2494 at 2900.548 kb on + strand, within Rru_A2494 at 2900.548 kb on + strand, within Rru_A2494 at 2900.548 kb on + strand, within Rru_A2494 at 2900.716 kb on + strand, within Rru_A2494 at 2900.716 kb on + strand, within Rru_A2494 at 2900.752 kb on + strand, within Rru_A2494 at 2900.818 kb on + strand, within Rru_A2494 at 2900.819 kb on - strand, within Rru_A2494 at 2900.887 kb on + strand, within Rru_A2494 at 2900.888 kb on - strand, within Rru_A2494 at 2901.184 kb on + strand at 2901.184 kb on + strand at 2901.184 kb on + strand at 2901.184 kb on + strand at 2901.184 kb on + strand at 2901.184 kb on + strand at 2901.185 kb on - strand at 2901.185 kb on - strand at 2901.185 kb on - strand at 2901.185 kb on - strand at 2901.185 kb on - strand at 2901.886 kb on - strand, within Rru_A2495 at 2902.177 kb on - strand at 2902.260 kb on + strand at 2902.263 kb on + strand at 2902.467 kb on - strand, within Rru_A2496 at 2902.503 kb on + strand, within Rru_A2496 at 2902.734 kb on - strand, within Rru_A2496 at 2902.749 kb on + strand, within Rru_A2496 at 2902.883 kb on + strand, within Rru_A2496 at 2902.883 kb on + strand, within Rru_A2496 at 2903.019 kb on - strand, within Rru_A2496
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,900,443 + Rru_A2494 0.17 +0.0 2,900,443 + Rru_A2494 0.17 -0.3 2,900,444 - Rru_A2494 0.17 +0.9 2,900,444 - Rru_A2494 0.17 +4.3 2,900,444 - Rru_A2494 0.17 +0.9 2,900,470 + Rru_A2494 0.20 +1.1 2,900,548 + Rru_A2494 0.28 +0.3 2,900,548 + Rru_A2494 0.28 +2.0 2,900,548 + Rru_A2494 0.28 +2.1 2,900,716 + Rru_A2494 0.45 +1.9 2,900,716 + Rru_A2494 0.45 +1.9 2,900,752 + Rru_A2494 0.49 +1.9 2,900,818 + Rru_A2494 0.56 +1.9 2,900,819 - Rru_A2494 0.56 +0.3 2,900,887 + Rru_A2494 0.63 +2.3 2,900,888 - Rru_A2494 0.63 +1.9 2,901,184 + +3.1 2,901,184 + -0.1 2,901,184 + +2.5 2,901,184 + +0.6 2,901,184 + +1.3 2,901,184 + -1.2 2,901,185 - -0.1 2,901,185 - -2.3 2,901,185 - -0.7 2,901,185 - +1.9 2,901,185 - +1.5 2,901,886 - Rru_A2495 0.66 +0.3 2,902,177 - +1.9 2,902,260 + +3.3 2,902,263 + +2.9 2,902,467 - Rru_A2496 0.20 -0.1 2,902,503 + Rru_A2496 0.23 +5.2 2,902,734 - Rru_A2496 0.41 +0.3 2,902,749 + Rru_A2496 0.42 -0.4 2,902,883 + Rru_A2496 0.52 +0.9 2,902,883 + Rru_A2496 0.52 +0.9 2,903,019 - Rru_A2496 0.63 -0.9
Or see this region's nucleotide sequence