Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2464 and Rru_A2465 are separated by 120 nucleotides Rru_A2465 and Rru_A2466 are separated by 103 nucleotides Rru_A2466 and Rru_A2467 are separated by 132 nucleotides
Rru_A2464: Rru_A2464 - Hydroxypyruvate reductase (NCBI), at 2,863,425 to 2,864,690
_A2464
Rru_A2465: Rru_A2465 - Pyruvate kinase (NCBI), at 2,864,811 to 2,866,247
_A2465
Rru_A2466: Rru_A2466 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 2,866,351 to 2,866,791
_A2466
Rru_A2467: Rru_A2467 - Ribosomal protein L36 (NCBI), at 2,866,924 to 2,867,100
_A2467
Position (kb)
2864
2865
2866
2867 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2864.068 kb on - strand, within Rru_A2464 at 2864.375 kb on + strand, within Rru_A2464 at 2864.456 kb on + strand, within Rru_A2464 at 2864.456 kb on + strand, within Rru_A2464 at 2864.457 kb on - strand, within Rru_A2464 at 2866.245 kb on + strand at 2866.409 kb on - strand, within Rru_A2466 at 2866.543 kb on + strand, within Rru_A2466 at 2866.543 kb on + strand, within Rru_A2466 at 2866.543 kb on + strand, within Rru_A2466 at 2866.543 kb on + strand, within Rru_A2466 at 2866.544 kb on - strand, within Rru_A2466 at 2866.544 kb on - strand, within Rru_A2466 at 2866.544 kb on - strand, within Rru_A2466 at 2866.544 kb on - strand, within Rru_A2466 at 2866.564 kb on + strand, within Rru_A2466 at 2866.564 kb on + strand, within Rru_A2466 at 2866.564 kb on + strand, within Rru_A2466 at 2866.564 kb on + strand, within Rru_A2466 at 2866.567 kb on - strand, within Rru_A2466 at 2866.567 kb on - strand, within Rru_A2466 at 2866.597 kb on + strand, within Rru_A2466 at 2866.598 kb on - strand, within Rru_A2466 at 2866.598 kb on - strand, within Rru_A2466 at 2866.599 kb on + strand, within Rru_A2466 at 2866.599 kb on + strand, within Rru_A2466 at 2866.600 kb on - strand, within Rru_A2466 at 2866.615 kb on + strand, within Rru_A2466 at 2866.615 kb on + strand, within Rru_A2466 at 2866.615 kb on + strand, within Rru_A2466 at 2866.615 kb on + strand, within Rru_A2466 at 2866.615 kb on + strand, within Rru_A2466 at 2866.615 kb on + strand, within Rru_A2466 at 2866.680 kb on + strand, within Rru_A2466 at 2866.790 kb on - strand at 2866.880 kb on + strand at 2866.880 kb on + strand at 2866.882 kb on + strand at 2866.887 kb on + strand at 2866.887 kb on + strand at 2866.887 kb on + strand at 2866.887 kb on + strand at 2866.887 kb on + strand at 2866.888 kb on - strand at 2866.888 kb on - strand at 2866.888 kb on - strand at 2866.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,864,068 - Rru_A2464 0.51 -0.1 2,864,375 + Rru_A2464 0.75 -3.9 2,864,456 + Rru_A2464 0.81 +0.9 2,864,456 + Rru_A2464 0.81 -4.1 2,864,457 - Rru_A2464 0.82 -3.4 2,866,245 + -0.9 2,866,409 - Rru_A2466 0.13 +0.0 2,866,543 + Rru_A2466 0.44 -2.1 2,866,543 + Rru_A2466 0.44 +1.3 2,866,543 + Rru_A2466 0.44 -1.1 2,866,543 + Rru_A2466 0.44 -2.9 2,866,544 - Rru_A2466 0.44 +1.3 2,866,544 - Rru_A2466 0.44 -1.1 2,866,544 - Rru_A2466 0.44 +1.0 2,866,544 - Rru_A2466 0.44 -4.6 2,866,564 + Rru_A2466 0.48 -1.0 2,866,564 + Rru_A2466 0.48 -0.1 2,866,564 + Rru_A2466 0.48 -1.7 2,866,564 + Rru_A2466 0.48 -0.4 2,866,567 - Rru_A2466 0.49 -1.8 2,866,567 - Rru_A2466 0.49 +1.9 2,866,597 + Rru_A2466 0.56 -0.7 2,866,598 - Rru_A2466 0.56 +0.3 2,866,598 - Rru_A2466 0.56 -1.8 2,866,599 + Rru_A2466 0.56 -2.0 2,866,599 + Rru_A2466 0.56 -0.0 2,866,600 - Rru_A2466 0.56 -1.4 2,866,615 + Rru_A2466 0.60 -0.6 2,866,615 + Rru_A2466 0.60 -0.0 2,866,615 + Rru_A2466 0.60 -1.7 2,866,615 + Rru_A2466 0.60 -2.3 2,866,615 + Rru_A2466 0.60 -0.9 2,866,615 + Rru_A2466 0.60 -3.2 2,866,680 + Rru_A2466 0.75 +0.2 2,866,790 - -1.2 2,866,880 + -0.4 2,866,880 + -3.0 2,866,882 + +1.5 2,866,887 + +0.2 2,866,887 + -0.4 2,866,887 + -0.6 2,866,887 + -0.7 2,866,887 + +1.7 2,866,888 - -3.2 2,866,888 - -2.1 2,866,888 - +0.6 2,866,888 - -3.4
Or see this region's nucleotide sequence