Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2465

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2464 and Rru_A2465 are separated by 120 nucleotidesRru_A2465 and Rru_A2466 are separated by 103 nucleotidesRru_A2466 and Rru_A2467 are separated by 132 nucleotides Rru_A2464: Rru_A2464 - Hydroxypyruvate reductase (NCBI), at 2,863,425 to 2,864,690 _A2464 Rru_A2465: Rru_A2465 - Pyruvate kinase (NCBI), at 2,864,811 to 2,866,247 _A2465 Rru_A2466: Rru_A2466 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 2,866,351 to 2,866,791 _A2466 Rru_A2467: Rru_A2467 - Ribosomal protein L36 (NCBI), at 2,866,924 to 2,867,100 _A2467 Position (kb) 2864 2865 2866 2867Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2864.068 kb on - strand, within Rru_A2464at 2864.375 kb on + strand, within Rru_A2464at 2864.456 kb on + strand, within Rru_A2464at 2864.456 kb on + strand, within Rru_A2464at 2864.457 kb on - strand, within Rru_A2464at 2866.245 kb on + strandat 2866.409 kb on - strand, within Rru_A2466at 2866.543 kb on + strand, within Rru_A2466at 2866.543 kb on + strand, within Rru_A2466at 2866.543 kb on + strand, within Rru_A2466at 2866.543 kb on + strand, within Rru_A2466at 2866.544 kb on - strand, within Rru_A2466at 2866.544 kb on - strand, within Rru_A2466at 2866.544 kb on - strand, within Rru_A2466at 2866.544 kb on - strand, within Rru_A2466at 2866.564 kb on + strand, within Rru_A2466at 2866.564 kb on + strand, within Rru_A2466at 2866.564 kb on + strand, within Rru_A2466at 2866.564 kb on + strand, within Rru_A2466at 2866.567 kb on - strand, within Rru_A2466at 2866.567 kb on - strand, within Rru_A2466at 2866.597 kb on + strand, within Rru_A2466at 2866.598 kb on - strand, within Rru_A2466at 2866.598 kb on - strand, within Rru_A2466at 2866.599 kb on + strand, within Rru_A2466at 2866.599 kb on + strand, within Rru_A2466at 2866.600 kb on - strand, within Rru_A2466at 2866.615 kb on + strand, within Rru_A2466at 2866.615 kb on + strand, within Rru_A2466at 2866.615 kb on + strand, within Rru_A2466at 2866.615 kb on + strand, within Rru_A2466at 2866.615 kb on + strand, within Rru_A2466at 2866.615 kb on + strand, within Rru_A2466at 2866.680 kb on + strand, within Rru_A2466at 2866.790 kb on - strandat 2866.880 kb on + strandat 2866.880 kb on + strandat 2866.882 kb on + strandat 2866.887 kb on + strandat 2866.887 kb on + strandat 2866.887 kb on + strandat 2866.887 kb on + strandat 2866.887 kb on + strandat 2866.888 kb on - strandat 2866.888 kb on - strandat 2866.888 kb on - strandat 2866.888 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
2,864,068 - Rru_A2464 0.51 -0.1
2,864,375 + Rru_A2464 0.75 -3.9
2,864,456 + Rru_A2464 0.81 +0.9
2,864,456 + Rru_A2464 0.81 -4.1
2,864,457 - Rru_A2464 0.82 -3.4
2,866,245 + -0.9
2,866,409 - Rru_A2466 0.13 +0.0
2,866,543 + Rru_A2466 0.44 -2.1
2,866,543 + Rru_A2466 0.44 +1.3
2,866,543 + Rru_A2466 0.44 -1.1
2,866,543 + Rru_A2466 0.44 -2.9
2,866,544 - Rru_A2466 0.44 +1.3
2,866,544 - Rru_A2466 0.44 -1.1
2,866,544 - Rru_A2466 0.44 +1.0
2,866,544 - Rru_A2466 0.44 -4.6
2,866,564 + Rru_A2466 0.48 -1.0
2,866,564 + Rru_A2466 0.48 -0.1
2,866,564 + Rru_A2466 0.48 -1.7
2,866,564 + Rru_A2466 0.48 -0.4
2,866,567 - Rru_A2466 0.49 -1.8
2,866,567 - Rru_A2466 0.49 +1.9
2,866,597 + Rru_A2466 0.56 -0.7
2,866,598 - Rru_A2466 0.56 +0.3
2,866,598 - Rru_A2466 0.56 -1.8
2,866,599 + Rru_A2466 0.56 -2.0
2,866,599 + Rru_A2466 0.56 -0.0
2,866,600 - Rru_A2466 0.56 -1.4
2,866,615 + Rru_A2466 0.60 -0.6
2,866,615 + Rru_A2466 0.60 -0.0
2,866,615 + Rru_A2466 0.60 -1.7
2,866,615 + Rru_A2466 0.60 -2.3
2,866,615 + Rru_A2466 0.60 -0.9
2,866,615 + Rru_A2466 0.60 -3.2
2,866,680 + Rru_A2466 0.75 +0.2
2,866,790 - -1.2
2,866,880 + -0.4
2,866,880 + -3.0
2,866,882 + +1.5
2,866,887 + +0.2
2,866,887 + -0.4
2,866,887 + -0.6
2,866,887 + -0.7
2,866,887 + +1.7
2,866,888 - -3.2
2,866,888 - -2.1
2,866,888 - +0.6
2,866,888 - -3.4

Or see this region's nucleotide sequence