Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2436

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2435 and Rru_A2436 are separated by 121 nucleotidesRru_A2436 and Rru_A2437 are separated by 28 nucleotidesRru_A2437 and Rru_A2438 are separated by 8 nucleotidesRru_A2438 and Rru_A2439 are separated by 1 nucleotides Rru_A2435: Rru_A2435 - Acetyl-CoA carboxylase, biotin carboxylase (NCBI), at 2,833,362 to 2,834,699 _A2435 Rru_A2436: Rru_A2436 - Leucyltransferase (NCBI), at 2,834,821 to 2,835,462 _A2436 Rru_A2437: Rru_A2437 - cellulase-like protein (NCBI), at 2,835,491 to 2,835,982 _A2437 Rru_A2438: Rru_A2438 - Mammalian cell entry related (NCBI), at 2,835,991 to 2,836,446 _A2438 Rru_A2439: Rru_A2439 - Mammalian cell entry related (NCBI), at 2,836,448 to 2,837,263 _A2439 Position (kb) 2834 2835 2836Strain fitness (log2 ratio) -2 -1 0 1 2at 2834.857 kb on + strandat 2834.908 kb on + strand, within Rru_A2436at 2835.015 kb on + strand, within Rru_A2436at 2835.135 kb on + strand, within Rru_A2436at 2835.493 kb on - strandat 2835.986 kb on - strandat 2835.986 kb on - strandat 2835.986 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,834,857 + -1.8
2,834,908 + Rru_A2436 0.14 -2.3
2,835,015 + Rru_A2436 0.30 -1.3
2,835,135 + Rru_A2436 0.49 +0.3
2,835,493 - +1.9
2,835,986 - -2.0
2,835,986 - -1.3
2,835,986 - -1.0

Or see this region's nucleotide sequence