Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2435 and Rru_A2436 are separated by 121 nucleotides Rru_A2436 and Rru_A2437 are separated by 28 nucleotides Rru_A2437 and Rru_A2438 are separated by 8 nucleotides Rru_A2438 and Rru_A2439 are separated by 1 nucleotides
Rru_A2435: Rru_A2435 - Acetyl-CoA carboxylase, biotin carboxylase (NCBI), at 2,833,362 to 2,834,699
_A2435
Rru_A2436: Rru_A2436 - Leucyltransferase (NCBI), at 2,834,821 to 2,835,462
_A2436
Rru_A2437: Rru_A2437 - cellulase-like protein (NCBI), at 2,835,491 to 2,835,982
_A2437
Rru_A2438: Rru_A2438 - Mammalian cell entry related (NCBI), at 2,835,991 to 2,836,446
_A2438
Rru_A2439: Rru_A2439 - Mammalian cell entry related (NCBI), at 2,836,448 to 2,837,263
_A2439
Position (kb)
2834
2835
2836 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2834.857 kb on + strand at 2834.908 kb on + strand, within Rru_A2436 at 2835.015 kb on + strand, within Rru_A2436 at 2835.135 kb on + strand, within Rru_A2436 at 2835.493 kb on - strand at 2835.986 kb on - strand at 2835.986 kb on - strand at 2835.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,834,857 + -1.8 2,834,908 + Rru_A2436 0.14 -2.3 2,835,015 + Rru_A2436 0.30 -1.3 2,835,135 + Rru_A2436 0.49 +0.3 2,835,493 - +1.9 2,835,986 - -2.0 2,835,986 - -1.3 2,835,986 - -1.0
Or see this region's nucleotide sequence