Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2435

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2433 and Rru_A2434 are separated by 57 nucleotidesRru_A2434 and Rru_A2435 are separated by 17 nucleotidesRru_A2435 and Rru_A2436 are separated by 121 nucleotidesRru_A2436 and Rru_A2437 are separated by 28 nucleotides Rru_A2433: Rru_A2433 - 3-dehydroquinate dehydratase (NCBI), at 2,832,397 to 2,832,846 _A2433 Rru_A2434: Rru_A2434 - Acetyl-CoA biotin carboxyl carrier (NCBI), at 2,832,904 to 2,833,344 _A2434 Rru_A2435: Rru_A2435 - Acetyl-CoA carboxylase, biotin carboxylase (NCBI), at 2,833,362 to 2,834,699 _A2435 Rru_A2436: Rru_A2436 - Leucyltransferase (NCBI), at 2,834,821 to 2,835,462 _A2436 Rru_A2437: Rru_A2437 - cellulase-like protein (NCBI), at 2,835,491 to 2,835,982 _A2437 Position (kb) 2833 2834 2835Strain fitness (log2 ratio) -2 -1 0 1 2at 2834.857 kb on + strandat 2834.908 kb on + strand, within Rru_A2436at 2835.015 kb on + strand, within Rru_A2436at 2835.135 kb on + strand, within Rru_A2436at 2835.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,834,857 + -1.8
2,834,908 + Rru_A2436 0.14 -2.3
2,835,015 + Rru_A2436 0.30 -1.3
2,835,135 + Rru_A2436 0.49 +0.3
2,835,493 - +1.9

Or see this region's nucleotide sequence